count the number of clonotype sizes in a seurat object combined with a VDJ library overall or by cluster
Source:R/get_clone_sizes.R
countCloneSizes.Rd![[Stable]](figures/lifecycle-stable.svg)
Get clonotype frequencies from a seurat object's metadata, either as one
whole table, or in a list of tables, based on the current / some custom
ident of each cell. Note that depending on the ident (indicated by the
by_cluster argument) there may be more or less clonotypes counted based
on the number of rows containing NA for that column of that ident if it
isn't the active ident.
Usage
countCloneSizes(
seurat_obj,
clonecall = "strict",
extra_filter = NULL,
...,
by_cluster = TRUE,
sort_decreasing = NULL
)Arguments
- seurat_obj
a seurat object combined with a VDJ library with
scRepertoire.- clonecall
character. The column name in the seurat object metadata to use. See
scRepertoiredocumentation for more information about this parameter that is central to both packages.- extra_filter
character. An additional string that should be formatted exactly like a statement one would pass into dplyr::filter that does additional filtering to cells in the seurat object - on top of the other keyword arguments - based on the metadata. This means that it will be logically AND'ed with any keyword argument filters. This is a more flexible alternative / addition to the filtering keyword arguments. For example, if one wanted to filter by the length of the amino acid sequence of TCRs, one could pass in something like
extra_filter = "nchar(CTaa) - 1 > 10". When involving characters, ensure to enclose with single quotes.- ...
additional "subsetting" keyword arguments indicating the rows corresponding to elements in the seurat object metadata that should be filtered by. E.g.,
seurat_clusters = c(1, 9, 10)will filter the cells to those in theseurat_clusterscolumn with any of the values 1, 9, and 10. Unfortunately, column names in the seurat object metadata cannot conflict with the keyword arguments. MAJOR NOTE if any subsetting keyword arguments are a prefix of any preceding argument names (e.g. a column namedreductionis a prefix of thereduction_baseargument) R will interpret it as the same argument unless both arguments are named. Additionally, this means any subsequent arguments must be named.- by_cluster
Logical or Character. If
TRUE, will output a list of table objects, with the table at each index corresponding to level in Idents(). Each table's names are the clonotype name indicated byclonecallafter filtering, while the values are the actual clone sizes. IfFALSE, outputs just the aggregate clone sizes for all cells. Note that ifFALSE, the output should be identical to that produced bymergeCloneSizes(countCloneSizes(..., by_cluster = TRUE)). Otherwise, this argument can also be a character indicating some column in the seurat object metadata to use a cell identity guiding (e.g."seurat_clusters").- sort_decreasing
a logical or NULL. If
TRUE/FALSE, sorts each/the table by clonotype frequency with largest/smallest clones first with a stable sorting algorithm, and if NULL, no order is guaranteed but the output is deterministic.
Examples
data("combined_pbmc")
countCloneSizes(combined_pbmc)
#> $`1`
#>
#> NA;NA_TRBV12-3.None.TRBJ2-4.TRBC2;TGTGCCAGCAGTTTCCTTGGGACAGTCCGCAAAAACATTCAGTACTTC
#> 1
#> NA;NA_TRBV19.None.TRBJ2-4.TRBC2;TGTGCCAGTAGTATAGCCCCACAGGGCGGCAAAAACATTCAGTACTTC
#> 1
#> NA;NA_TRBV5-1.None.TRBJ2-5.TRBC2;TGCGCCAGCAGCTTGGGTCAGGGTGTGCGAGAGACCCAGTACTTC
#> 1
#> NA;NA_TRBV6-5.None.TRBJ1-3.TRBC1;TGTGCCAGCAGTTACTCGCCGACAGGGGCTCGTAACACCATATATTTT
#> 1
#> TRAV1-1.TRAJ12.TRAC;TGCGCTCCGATGGATAGCAGCTATAAATTGATCTTC_TRBV6-1.None.TRBJ1-1.TRBC1;TGTGCCAGCAGGGATGGGGGGGGGGACACTGAAGCTTTCTTT
#> 1
#> TRAV1-2.TRAJ17.TRAC;TGTGCTGCTGCAACAGGGGCTGCAGGCAACAAGCTAACTTTT_TRBV19.None.TRBJ2-3.TRBC2;TGTGCCAGTAGTCCGACTAGCGGCGCGGCAGATACGCAGTATTTT
#> 1
#> TRAV1-2.TRAJ9.TRAC;TGTGCTGTTAATACTGGAGGCTTCAAAACTATCTTT_TRBV29-1.None.TRBJ2-7.TRBC2;TGCAGCGTTGAAGTGCGGCGGGGGGCCTACGAGCAGTACTTC
#> 1
#> TRAV10.TRAJ6.TRAC;TGTGTGGTGAGCGGAGGAGGAAGCTACATACCTACATTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCACCAAAGGAAGGGTTAATGTGGACTAGCGACGGCACAGATACGCAGTATTTT
#> 1
#> TRAV12-1.TRAJ6.TRAC;TGTGTGGTGAACACCCCAGGAGGAAGCTACATACCTACATTT_TRBV7-2.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCTTAGTAGACGGCGGCTTGGAGCCCCAGCATTTT
#> 1
#> TRAV12-2.TRAJ11.TRAC;TGTGCCGTGAACAGGCGCGGATACAGCACCCTCACCTTT_TRBV12-5.None.TRBJ2-7.TRBC2;TGTGCTAGTGGTTTGGTGCCTCCGGGACAGCTTTCCTACGAGCAGTACTTC
#> 1
#> TRAV12-2.TRAJ23.TRAC;TRAV22.TRAJ18.TRAC;TGTGCCGTGAACATCCCCCTTAACCAGGGAGGAAAGCTTATCTTC;TGTGCTGTGGAGCGATCAAGAGGCTCAACCCTGGGGAGGCTATACTTT_TRBV29-1.None.TRBJ1-1.TRBC1;TGCAGCGTCAGCATGGGGGACTCTGAAGCTTTCTTT
#> 1
#> TRAV12-2.TRAJ4.TRAC;TGTGCCGTGATTTTGTTTTCTGGTGGCTACAATAAGCTGATTTTT_TRBV7-6.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCCCGGGGAACACTGAAGCTTTCTTT
#> 1
#> TRAV12-2.TRAJ43.TRAC;TGTGCCGCGGTCAACAATGACATGCGCTTT_TRBV29-1.None.TRBJ2-3.TRBC2;TGCAGCGTCCGCGGACTAGCGGGGATCACAGATACGCAGTATTTT
#> 1
#> TRAV12-2.TRAJ46.TRAC;TGTGCCGTGAACTTTGGGGGTAGCAGCGGAGACAAGCTGACTTTT_TRBV5-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCTGGTTCAGGGGAGGGACAGATACGCAGTATTTT
#> 1
#> TRAV12-2.TRAJ47.TRAC;TGTGCCGTGAACATGGGGGAATATGGAAACAAACTGGTCTTT_TRBV24-1.None.TRBJ1-1.TRBC1;TGTGCCACCAGTGATGGGGGAACGATTGAAGCTTTCTTT
#> 1
#> TRAV12-2.TRAJ52.TRAC;TGTGCCGTGAACGTTTGGGACGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV19.None.TRBJ2-1.TRBC2;TGTGCCAGTAGTATAAATGGTTGGGTAGCGGGGAATGAGCAGTTCTTC
#> 1
#> TRAV12-2.TRAJ53.TRAC;TGTGCCGTGAACATTTGGCACCGTAGCAACTATAAACTGACATTT_TRBV7-2.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCTCCCAGGGACCCACAGATACGCAGTATTTT
#> 1
#> TRAV12-3.TRAJ23.TRAC;TRAV29/DV5.TRAJ52.TRAC;TGTGCAATGAGGCCGGCTGGGAACCAGGGAGGAAAGCTTATCTTC;TGTGCAGCAAGCGCGGGGGGGAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV20-1.None.TRBJ1-4.TRBC1;TGCAGTGCTAGGCAGCCTTCTAATGAAAAACTGTTTTTT
#> 1
#> TRAV12-3.TRAJ44.TRAC;TGTGCAATGAGGTCTACCGGCACTGCCAGTAAACTCACCTTT_TRBV20-1.None.TRBJ2-5.TRBC2;TGCAGTGGGGCTGGAGGGGTGGGAGAGACCCAGTACTTC
#> 1
#> TRAV12-3.TRAJ52.TRAC;TGTGCAATGAGCGGAAGTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV29-1.None.TRBJ2-1.TRBC2;TRBV7-2.None.TRBJ1-4.TRBC1;TGCAGCGGCTCCGGGACTAGCCACAATGAGCAGTTCTTC;TGTGCCAGCAGCTTAGTACGGGGGGATAATGAAAAACTGTTTTTT
#> 1
#> TRAV12-3.TRAJ58.TRAC;TGTGCAACCCTAGAAACCAGTGGCTCTAGGTTGACCTTT_TRBV12-4.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTTTAAACGTCGGCGGCAGGACGGCCTTC
#> 1
#> TRAV13-1.TRAJ10.TRAC;TGTGCAGCAAGTCCCGGGGGGACGTCGATACTCACGGGAGGAGGAAACAAACTCACCTTT_TRBV27.None.TRBJ1-1.TRBC1;TGTGCCAGCATGGGTAGGGGGCGGACTGAAGCTTTCTTT
#> 1
#> TRAV13-1.TRAJ3.TRAC;TGTGCAGCAAGTATAGGGTACAGCAGTGCTTCCAAGATAATCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCCCGTCCTAGCGGAAGCACAGATACGCAGTATTTT
#> 1
#> TRAV13-1.TRAJ31.TRAC;TGTGCAGCAAGTACAGGGGCCAGACTCATGTTT_TRBV6-5.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCCAAGGGGCAGGGGTACAGCCCCAGCATTTT
#> 1
#> TRAV13-1.TRAJ37.TRAC;TGTGCAGCAAGACCAACCCTCTCTAGCAACACAGGCAAACTAATCTTT_TRBV6-1.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTGAGGAGGGTCGGAATACGCAGTATTTT
#> 1
#> TRAV13-1.TRAJ54.TRAC;TGTGCAGCAAAAAGGACAGCCCAGAAGCTGGTATTT_TRBV11-3.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTAGGGACGACTAGCGGGGACGGTAATGAGCAGTTCTTC
#> 1
#> TRAV13-1.TRAJ9.TRAC;TRAV12-2.TRAJ37.TRAC;TGTGCAGCAAGTATAAGTGGAGGCTTCAAAACTATCTTT;TGTGCCGTGCGCCCCCCCCCTAGCAACACAGGCAAACTAATCTTT_TRBV6-6.None.TRBJ1-5.TRBC1;TRBV6-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGTAACCTCTCGGGCCGCCAGGACGGTCAGCCCCAGCATTTT;TGTGCCAGCAGTCCAGACAGGGTTATGTACTTC
#> 1
#> TRAV13-2.TRAJ53.TRAC;TRAV39.TRAJ57.None;TGTGCAGAGATTCGAGGTAGCAACTATAAACTGACATTT;TGTGCCGGTCCGTCAACTCAGGGCGGATCTGAAAAGCTGGTCTTT_TRBV2.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTGTTTTTCAGGTTAATGAAAAACTGTTTTTT
#> 1
#> TRAV13-2.TRAJ9.TRAC;TGTGCAGAGAATATTAATACTGGAGGCTTCAAAACTATCTTT_TRBV4-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCCCGAAGAAGGGACCTTCGGAGACCCAGTACTTC
#> 1
#> TRAV14/DV4.TRAJ50.TRAC;TRAV38-2/DV8.TRAJ33.TRAC;TGTGCAATGAGAGAGGGCTCCTCGGGAATGAAAACCTCCTACGACAAGGTGATATTT;TGTGGAATCGATAGCAACTATCAGTTAATCTGG_TRBV5-1.None.TRBJ2-7.TRBC2;TGCGCCAGCAGCTTCGGATTACAGGGGCTGGGGGACGAGCAGTACTTC
#> 1
#> TRAV14/DV4.TRAJ9.TRAC;TGTGCAATGTCGACTGGAGGCTTCAAAACTATCTTT_TRBV28.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTATTTACAGCGGGGCTCCCTACGAGCAGTACTTC
#> 1
#> TRAV17.TRAJ11.TRAC;TGTGCTACGGACCTATACAGCACCCTCACCTTT_TRBV15.None.TRBJ1-1.TRBC1;TGTGCCACCAGCAGAGCGGAGAACACTGAAGCTTTCTTT
#> 1
#> TRAV19.TRAJ13.TRAC;TRAV21.TRAJ44.TRAC;TGTGCTCTGAGGGAAGGTTCTGGGGGTTACCAGAAAGTTACCTTT;TGTGCTGTGAGGCCTGGCGGGGGCGGCACTGCCAGTAAACTCACCTTT_TRBV18.None.TRBJ1-1.TRBC1;TRBV12-5.None.TRBJ2-5.TRBC2;TGTGCCAGCTCACCACCCACAGGGGGGACGAACACTGAAGCTTTCTTT;TGTGCTAGTGGTTTGGCCCTCGGGGGTGTACTCGACCAAGAGACCCAGTACTTC
#> 1
#> TRAV20.TRAJ28.TRAC;TGTGCTGTGCAGGGGACTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV5-1.None.TRBJ1-2.TRBC1;TGCGCCAGCAGCTTAGACGGCAAAGGCTACACCTTC
#> 1
#> TRAV20.TRAJ30.TRAC;TGTGCTGTCCGGACTAACAGAGATGACAAGATCATCTTT_TRBV5-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCTTGGGGGGGGCAGGCACAGATACGCAGTATTTT
#> 1
#> TRAV20.TRAJ52.TRAC;TGTGCTGTGCAGGCCGGATATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV7-2.None.TRBJ2-2.TRBC2;TGTGCCAGCAGACTAACCGGTACAAGGGGCGGGGAGCTGTTTTTT
#> 1
#> TRAV20.TRAJ9.TRAC;TGTGCTGTGCAGGCACATACTGGAGGCTTCAAAACTATCTTT_TRBV5-8.None.TRBJ1-2.TRBC1;TGTGCCAGCCCGCGGGAAGGGGGCGACTATGGCTACACCTTC
#> 1
#> TRAV21.TRAJ44.TRAC;TGTGCTGTGAGATATGGTAGGGGCGGCACTGCCAGTAAACTCACCTTT_TRBV4-1.None.TRBJ1-4.TRBC1;TGCGCCAGCAGCCGAGATTACTTACGAATCCGGACGGCAACTAATGAAAAACTGTTTTTT
#> 1
#> TRAV22.TRAJ39.TRAC;TRAV8-2.TRAJ9.TRAC;TGTGCTGTTAATAATGCAGGCAACATGCTCACCTTT;TGTGTTGTGAGCGTAAATACTGGAGGCTTCAAAACTATCTTT_TRBV12-3.None.TRBJ2-5.TRBC2;TRBV19.None.TRBJ1-2.TRBC1;TGTGCCAGCACCAGACAGGGGAGGGGAGAGACCCAGTACTTC;TGTGCCAGTAGTATCAGTTCCTATGGCTACACCTTC
#> 1
#> TRAV22.TRAJ49.TRAC;TGTGCTGTCTCGAACACCGGTAACCAGTTCTATTTT_TRBV5-4.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTGAGCCAGGGATAGATACGCAGTATTTT
#> 1
#> TRAV23/DV6.TRAJ42.TRAC;TRAV9-2.TRAJ42.TRAC;TGTGCAGCAAGTATACTATCTGGAGGAAGCCAAGGAAATCTCATCTTT;TGTGCTCTGAGTGGTGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV20-1.None.TRBJ1-1.TRBC1;TRBV5-6.None.TRBJ1-5.TRBC1;TGCAGTGCTAATGGTGGGGCAGGGATTGAAGCTTTCTTT;TGTGCCAGCAGCACTTGGGGAGGGTATCAGCCCCAGCATTTT
#> 1
#> TRAV25.TRAJ30.TRAC;TGTGCAGGGAAGTGGGATGACAAGATCATCTTT_TRBV5-1.None.TRBJ1-1.TRBC1;TGCGCCAGCAGCCGGGGCTTGGAGAACACTGAAGCTTTCTTT
#> 1
#> TRAV26-1.TRAJ15.TRAC;TGCATCGTCGTGTCCCAGGCAGGAACTGCTCTGATCTTT_TRBV11-3.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCTTACGCGTGAACACTGAAGCTTTCTTT
#> 1
#> TRAV26-1.TRAJ17.TRAC;TGCATCGCGGTTAAAGCTGCAGGCAACAAGCTAACTTTT_TRBV2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTGTTCAAAGCTCCTACAATGAGCAGTTCTTC
#> 1
#> TRAV26-1.TRAJ30.TRAC;TGCATCGTCAGAGCCAATAGAGATGACAAGATCATCTTT_TRBV12-3.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTTTAACGAGGGGCCACGATGGCTACACCTTC
#> 1
#> TRAV26-1.TRAJ30.TRAC;TGCATCGTCAGAGCCAATAGAGATGACAAGATCATCTTT_TRBV20-1.None.TRBJ2-7.TRBC2;TGCAGTGCTAGGCGGCCAGCGAAATACGAGCAGTACTTC
#> 1
#> TRAV26-1.TRAJ31.TRAC;TGCATCGCCCGGGGGGGGTACAACAATGCCAGACTCATGTTT_TRBV20-1.None.TRBJ1-6.TRBC1;TGCAGTGCTAGAGAAAGACTAGATTCACCCCTCCACTTT
#> 1
#> TRAV26-2.TRAJ33.TRAC;TRAV36/DV7.TRAJ56.TRAC;TGCATCCTGGGTAGCAACTATCAGTTAATCTGG;TGTGCTGAGGTGGGAGCCAATAGTAAGCTGACATTT_TRBV28.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTTTCGGGGGACAGGGGGCTAAAGGAGGCTACACCTTC
#> 1
#> TRAV27.TRAJ10.TRAC;TGTGCAGGAGCGACGGCGGGAGGAGGAAACAAACTCACCTTT_TRBV19.None.TRBJ2-3.TRBC2;TGTGCCAGTACGTTCCGGGACACCCGAGATACGCAGTATTTT
#> 1
#> TRAV27.TRAJ6.TRAC;TGTGCAGGTGAAGGAGGAAGCTACATACCTACATTT_TRBV11-2.None.TRBJ2-3.TRBC2;TRBV6-5.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCTTAGATTTTCCAAGGAAGTATTTT;TGTGCCAGCAGTCCGCAGACAGACTTCAATCAGCCCCAGCATTTT
#> 1
#> TRAV27.TRAJ9.TRAC;TGTGCAGGAGGGACTGGAGGCTTCAAAACTATCTTT_TRBV7-2.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCTTAGTCTATGGATACACTGAAGCTTTCTTT
#> 1
#> TRAV29/DV5.TRAJ27.TRAC;TGTGCAGCAAGGGAGGCATTCAATGCAGGCAAATCAACCTTT_TRBV28.None.TRBJ1-6.TRBC1;TGTGCCAGCAGTTCCTCACGACAGGGCAATTCACCCCTCCACTTT
#> 1
#> TRAV29/DV5.TRAJ40.TRAC;TRAV38-2/DV8.TRAJ39.TRAC;TGTGCAGCAAGCAAGCTCGGAGGAACCTACAAATACATCTTT;TGTGCTTATAGGAATAATGCAGGCAACATGCTCACCTTT_TRBV6-2.None.TRBJ2-3.TRBC2;TRBV7-9.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCAGAGTCCCCGGGGGGGCCTGACAGATACGCAGTATTTT;TGTGCCAGCAGCCCCTCCAAACTCGGGGGTAATGAGCAGTTCTTC
#> 1
#> TRAV29/DV5.TRAJ45.TRAC;TGTGCAGCAAGCGCGAATTCAGGAGGAGGTGCTGACGGACTCACCTTT_TRBV20-1.None.TRBJ1-6.TRBC1;TGCAGTGCGACAGAATATAATTCACCCCTCCACTTT
#> 1
#> TRAV29/DV5.TRAJ56.TRAC;TGTGCAGCAAGCCGGGGAGGAGCCAATAGTAAGCTGACATTT_TRBV7-2.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCCAAGGGGGGCCTTCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV3.TRAJ22.TRAC;TGTGCTGTGAGAGACTTTCAGGGTTCTTCTGGTTCTGCAAGGCAACTGACCTTT_TRBV9.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCGTAGCTCCTGCGGGGAGCACAGATACGCAGTATTTT
#> 1
#> TRAV34.TRAJ29.TRAC;TGTGGAGCAGACAAAGGAAACACACCTCTTGTCTTT_TRBV6-5.None.TRBJ2-7.TRBC2;TGTGCCAGCAGGTTCGCCTACGAGCAGTACTTC
#> 1
#> TRAV36/DV7.TRAJ28.TRAC;TGTGCTGTGGTGATTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV18.None.TRBJ2-7.TRBC2;TGTGCCAGCTCACCGGGAGGGGGCCGGTACGAGCAGTACTTC
#> 1
#> TRAV36/DV7.TRAJ33.TRAC;TGTGCTGTGCCCACCATGGATAGCAACTATCAGTTAATCTGG_TRBV30.None.TRBJ1-4.TRBC1;TGTGCCTGGACCCCAACACGGGTCTCGTCAAAACTGTTTTTT
#> 1
#> TRAV38-1.TRAJ48.TRAC;TGTGCTTTCATGAAGCGCGGATCCTTTGGAAATGAGAAATTAACCTTT_TRBV5-8.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCCGGGACAACCGATTTACAATGAGCAGTTCTTC
#> 1
#> TRAV38-1.TRAJ58.TRAC;TGTGCTTTCATGACCAAAACCAGTGGCTCTAGGTTGACCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGCCCCCAGGGGGCAGCCAAAGGGACAGATACGCAGTATTTT
#> 1
#> TRAV38-2/DV8.TRAJ23.TRAC;TGTGCTTATAGGAGACCTACCTATAACCAGGGAGGAAAGCTTATCTTC_TRBV11-3.None.TRBJ2-5.TRBC2;TRBV6-2.None.TRBJ1-4.TRBC1;TGTGCCAGCACCTTCCCTAGGGCCCCCCAGACCCAGTACTTC;TGTGCCAGCAGCCGCCGGGACAGGGGCCCTGAAAAACTGTTTTTT
#> 1
#> TRAV38-2/DV8.TRAJ31.TRAC;TGTCGTTTAAATGCCAGACTCATGTTT_TRBV6-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTTACTCGACAGGGTATGAGCAGTTCTTC
#> 1
#> TRAV38-2/DV8.TRAJ32.TRAC;TGTGCTTATAGGAGCATAGGTGGTGCTACAAACAAGCTCATCTTT_TRBV18.None.TRBJ1-2.TRBC1;TRBV30.None.TRBJ1-1.TRBC1;TGTGCCAGCTCACCCGGGACGGGTCATGGCTACACCTTC;TGTGCCTGGAGGTTTTTGTACACTGAAGCTTTCTTT
#> 1
#> TRAV38-2/DV8.TRAJ42.TRAC;TGTGCTTATACAAATTATGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV12-4.None.TRBJ2-7.TRBC2;TGTGCCATTAGCGGGGGACCCTACGAGCAGTACTTC
#> 1
#> TRAV4.TRAJ31.TRAC;TGCCTCGTGGGTGACAATAACAATGCCAGACTCATGTTT_TRBV29-1.None.TRBJ2-2.TRBC2;TGCAGCGCCGAAGAGCCTAGGGGTACCGGGGAGCTGTTTTTT
#> 1
#> TRAV41.TRAJ53.TRAC;TRAV12-1.TRAJ9.TRAC;TGTGCTGTCAAGGGGGGAGGTAGCAACTATAAACTGACATTT;TGTGTGGTGACAGGAAATACTGGAGGCTTCAAAACTATCTTT_TRBV6-6.None.TRBJ2-7.TRBC2;TRBV5-6.None.TRBJ2-3.TRBC2;TGTGCCAGCACCCTCGACGGCTACGAGCAGTACTTC;TGTGCCAGCAGCATCCACGGGACTAGCGGGAGAATGGGCACAGATACGCAGTATTTT
#> 1
#> TRAV5.TRAJ31.TRAC;TRAV6.TRAJ20.TRAC;TGTGCAGAGACCACCTCGGGCAGACTCATGTTT;TGTGCTCTAAGGCCTAACGACTACAAGCTCAGCTTT_TRBV20-1.None.TRBJ2-2.TRBC2;TGCAGTGCTAGTCTGGGAGGGGGGCGCCAGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV8-1.TRAJ18.TRAC;TRAV16.TRAJ23.TRAC;TGTGCCGTGAATGCTCGGCGAGGCTCAACCCTGGGGAGGCTATACTTT;TGTGCTCTGGGGACGATTTATAACCAGGGAGGAAAGCTTATCTTC_TRBV5-4.None.TRBJ2-3.TRBC2;TRBV25-1.None.TRBJ1-4.TRBC1;TGTGCCAGCAGCTTGGCTAGCGGGAACACAGATACGCAGTATTTT;TGTGCCAGCAGTGAATCGGGGAGGGGGCAAGGAAAACTGTTTTTT
#> 1
#> TRAV8-4.TRAJ22.TRAC;TGTGCTGTGATCGGTTCTGCAAGGCAACTGACCTTT_TRBV29-1.None.TRBJ2-1.TRBC2;TRBV6-1.None.TRBJ1-2.TRBC1;TGCAGCGTCAAGGTCCCGGCTAGCGGGGATGAGCAGTTCTTC;TGTGCCAGCAGTGAAGGACAGGGTTCGAGGGGCTACACCTTC
#> 1
#> TRAV8-4.TRAJ43.TRAC;TGTGCTGTGAGTGATCTAAATGACATGCGCTTT_TRBV20-1.None.TRBJ2-5.TRBC2;TGCAGTGCTACCACCGATAGCGGGACGGTACAAGAGACCCAGTACTTC
#> 1
#> TRAV8-4.TRAJ45.TRAC;TGTGCTGTGAGAAAGAGGGGAGGAGGTGCTGACGGACTCACCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCTAGAGATAGCGGGGGACTCACAGATACGCAGTATTTT
#> 1
#> TRAV8-6.TRAJ20.TRAC;TGTGCTGTGAGTGAAGACGACTACAAGCTCAGCTTT_TRBV5-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCGGCGGGACTCTTAGCACAGATACGCAGTATTTT
#> 1
#> TRAV9-2.TRAJ40.TRAC;TGTGCTCTGAGAGGGCCAGGAACCTACAAATACATCTTT_TRBV30.None.TRBJ1-1.TRBC1;TGTGCCTGGAGTGTATGGACGGCCGACACTGAAGCTTTCTTT
#> 1
#> TRAV9-2.TRAJ42.TRAC;TGTGCTCTCCTCAGTTACGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV5-4.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCTTGGAAGGGGGCAATCAGCCCCAGCATTTT
#> 1
#>
#> $`2`
#>
#> NA;NA_TRBV11-2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTTCGGATCTAGCGGGGGGTACTACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV15.None.TRBJ1-1.TRBC1;TGTGCCACCAGCGAGGGGGGGGACACTGAAGCTTTCTTT
#> 1
#> NA;NA_TRBV4-3.None.TRBJ2-7.TRBC2;TRBV6-1.None.TRBJ2-5.TRBC2;TGCGCCAGCACCCTGGACAGCTCCTACGAGCAGTACTTC;TGTGCCACTAAGCTAGCGGGGGGGCGCCAGACCCAGTACTTC
#> 1
#> TRAV1-2.TRAJ15.TRAC;TGTGCCCCGGCCAACCAGGCAGGAACTGCTCTGATCTTT_TRBV12-4.None.TRBJ1-2.TRBC1;TRBV7-6.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTCTGACAGGGAACTATGGCTACACCTTC;TGTGCCAGCCACGGCGCCAGGGGTGATGGCTTTTGTGAAAAACTGTTTTTT
#> 1
#> TRAV1-2.TRAJ21.TRAC;TGTGCCCTAAGATACAACTTCAACAAATTTTACTTT_TRBV4-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCCGCGGGGTAGCGGTACCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV1-2.TRAJ28.TRAC;TGTGCTGTTCGGGCTGGGAGTTACCAACTCACTTTC_TRBV12-3.None.TRBJ2-2.TRBC2;TGTGCCAGCACCCAGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV1-2.TRAJ35.TRAC;TGTGCTGTGAGGGCCTTTATAGGCTTTGGGAATGTGCTGCATTGC_TRBV6-2.None.TRBJ2-6.TRBC2;TGTGCCAGCAGTTTTGTTCCCGGGACACCCGGTTACTCTGGGGCCAACGTCCTGACTTTC
#> 1
#> TRAV12-2.TRAJ29.TRAC;TGTGCCGTGAACCCGAATTCAGGAAACACACCTCTTGTCTTT_TRBV4-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCCAAGGACAGTCCTCCCAACTTGCAGAGACCCAGTACTTC
#> 1
#> TRAV12-3.TRAJ10.TRAC;TGTGCATTAATACTCACGGGAGGAGGAAACAAACTCACCTTT_TRBV6-5.None.TRBJ1-3.TRBC1;TGTGCCAGCAGTTACGGGAGGACAGGGTATCGTAACACCATATATTTT
#> 1
#> TRAV12-3.TRAJ22.TRAC;TGTGCAATGAGCGATGCCTCTGGTTCTGCAAGGCAACTGACCTTT_TRBV30.None.TRBJ1-1.TRBC1;TGTGCCTGGAGTGTCCCACCCTTAACGACAGGGTTTGGAAACACTGAAGCTTTCTTT
#> 1
#> TRAV12-3.TRAJ53.TRAC;TGTGCAATGAGAGGGACTGGAGGTAGCAACTATAAACTGACATTT_TRBV7-8.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTAGGACGTAGCAATGAGCAGTTCTTC
#> 1
#> TRAV13-1.TRAJ26.TRAC;TGTGCAGCAAGTATTTCCAACTATGGTCAGAATTTTGTCTTT_TRBV18.None.TRBJ1-1.TRBC1;TGTGCCAGCTCACTGGGGGGGAACACTGAAGCTTTCTTT
#> 1
#> TRAV13-1.TRAJ37.TRAC;TRAV38-2/DV8.TRAJ37.TRAC;TGTGCAGCATCGTTCGGGGGACATGGCTCTAGCAACACAGGCAAACTAATCTTT;TGTGCTTATAGGAGCGCGAGCACAGGCAAACTAATCTTT_TRBV5-1.None.TRBJ2-2.TRBC2;TRBV6-5.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCGTGGACAGGGGATTTGGCGGGGAGCTGTTTTTT;TGTGCCAGCAGTTTGAGCGAGGGGGCTCAACGGGGGTCCACAGATACGCAGTATTTT
#> 1
#> TRAV13-1.TRAJ6.TRAC;TGTGCATCAGGAGGAAGCTACATACCTACATTT_TRBV5-1.None.TRBJ2-2.TRBC2;TRBV5-5.None.TRBJ1-4.TRBC1;TGCGCCAGCAGCTCCCTGGGCGGCACTTCGAACACCGGGGAGCTGTTTTTT;TGTGCCAGCAGCTTGAACCCTGGTGAAAAACTGTTTTTT
#> 1
#> TRAV13-2.TRAJ15.TRAC;TRAV12-1.TRAJ24.TRAC;TGTGCAGAGAATATAAACCAGGCAGGAACTGCTCTGATCTTT;TGTGTGGTGAAAAGCTGGGGGAAATTGCAGTTT_TRBV11-2.None.TRBJ1-6.TRBC1;TRBV18.None.TRBJ1-3.TRBC1;TGTGCCAGCAGCTTAGAAGGACAGGATTATAATTCACCCCTCCACTTT;TGTGCCAGCTCACCGACGCAGGCCCCGTCTGGAAACACCATATATTTT
#> 1
#> TRAV13-2.TRAJ42.TRAC;TGTGCAGAGAATAACCCCGGAAATCTCATCTTT_TRBV2.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTGCGTGGGGGAACTATGGCTACACCTTC
#> 1
#> TRAV14/DV4.TRAJ35.TRAC;TGTGCAATGAGAGAGGGCCCGGGCTTTGGGAATGTGCTGCATTGC_TRBV6-6.None.TRBJ1-6.TRBC1;TGTGCCAGCAGCTCAAACGTCCACACAGGTCCTAATTCACCCCTCCACTTT
#> 1
#> TRAV14/DV4.TRAJ38.TRAC;TGTGCAATGAGAGTGGTGCTCGGGGCTGGCAACAACCGTAAGCTGATTTGG_TRBV5-1.None.TRBJ2-5.TRBC2;TGCGCCAGCAGCTTGGGACTAGCGGGGGTGCGAGAGACCCAGTACTTC
#> 1
#> TRAV16.TRAJ48.TRAC;TRAV8-6.TRAJ23.TRAC;TGTGCTCTAATAGTGGGTCGGGCTAACTTTGGAAATGAGAAATTAACCTTT;TGTGCTGTGAGTGACGATAACCAGGGAGGAAAGCTTATCTTC_TRBV5-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCTCCTTAGCGGGGTCAGATACGCAGTATTTT
#> 1
#> TRAV19.TRAJ35.TRAC;TRAV10.TRAJ13.TRAC;TGTGCTCTGAGGATAGGCTTTGGGAATGTGCTGCATTGC;TGTGTGGTGAGCTATAATTCTGGGGGTTACCAGAAAGTTACCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTTTAATGGGGTCCTACGAGCAGTACTTC
#> 1
#> TRAV19.TRAJ47.TRAC;TGTGCTCTGAGTGGGGGATATGGAAACAAGCTGGTCTTT_TRBV19.None.TRBJ1-1.TRBC1;TGTGCCAGTAGTAGTGGACAGGGACCTTGGAACAAGTTT
#> 1
#> TRAV21.TRAJ32.TRAC;TRAV9-2.TRAJ32.TRAC;TGTGCCGCGGGTGGAGGTGCTACAAACAAGCTCATCTTT;TGTGCTCTGAGTGATCGATCGGGCAAGCTCATCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGATCGGGAGCCAACTACGAGCAGTACTTC
#> 1
#> TRAV21.TRAJ39.TRAC;TGTGCTGTGAACGACAACATGCTCACCTTT_TRBV12-3.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTTTCAGCGGGACCGGGGGCGAAAAACTGTTTTTT
#> 1
#> TRAV25.TRAJ37.TRAC;TGTGCAGGTCGATTCCTCAACACAGGCAAACTAATCTTT_TRBV2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTGAACGGCTAGCGGGGTACAATGAGCAGTTCTTC
#> 1
#> TRAV25.TRAJ44.TRAC;TGTGCAGGGGGGGCCGGCACTGCCAGTAAACTCACCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCAGAGTCGGGACTTCGAACTTTCACAGATACGCAGTATTTT
#> 1
#> TRAV25.TRAJ6.TRAC;TGTGCCCCCAGAGCAGGAGGAAGCTACATACCTACATTT_TRBV11-2.None.TRBJ1-1.None;TGTGCCAGCAGCTTACCCCGGACGGGCGACACTGAAGCTTTCTTT
#> 1
#> TRAV26-1.TRAJ26.TRAC;TGCATCGTCAGAGTCGAAGGCGGAAACTATGGTCAGAATTTTGTCTTT_TRBV4-3.None.TRBJ1-3.TRBC1;TGCGCCAGCAGCCAAGATTCGATCGGCTCTGGAAACACCATATATTTT
#> 1
#> TRAV26-2.TRAJ24.TRAC;TGCATCCTGAGTCCTCCAACTGACAGCTGGGGGAAATTGCAGTTT_TRBV30.None.TRBJ1-6.TRBC1;TGTGCCTGGAGATGGAGGCATTCACCCCTCCACTTT
#> 1
#> TRAV27.TRAJ20.TRAC;TGTGCAGGATGGTCCGACTACAAGCTCAGCTTT_TRBV7-9.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTACCCACAGGGGGCGCCTCAAATGAGCAGTTCTTC
#> 1
#> TRAV27.TRAJ49.TRAC;TGTGCAGGATCCACCGGTAACCAGTTCTATTTT_TRBV6-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGAACTTTCGGGGGCAGGGGTGATGAGCAGTTCTTC
#> 1
#> TRAV29/DV5.TRAJ42.TRAC;TRAV13-1.TRAJ4.TRAC;TGTGCAGCAAGCGGGGGCGGAGGAAGCCAAGGAAATCTCATCTTT;TGTGCAGTAGGGTCTGGTGGCTACAATAAGCTGATTTTT_TRBV5-8.None.TRBJ2-1.TRBC2;TRBV30.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCACCGGGGACACCATGAGGGAGCAGTTCTTC;TGTGCCTGGGGAGGGACAGTGAACACTGAAGCTTTCTTT
#> 1
#> TRAV29/DV5.TRAJ48.TRAC;TGTGCAGCAAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT_TRBV3-1.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCGGCTAGCGGACAATGAGCAGTTCTTC
#> 1
#> TRAV29/DV5.TRAJ9.TRAC;TGTGCAGCAAGGGATACTGGAGGCTTCAAAACTATCTTT_TRBV5-4.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCTCCCAAATGAACACTGAAGCTTTCTTT
#> 1
#> TRAV3.TRAJ17.TRAC;TGTGCTGTGAGAGCAGGGGCTGCAGGCAACAAGCTAACTTTT_TRBV20-1.None.TRBJ1-2.TRBC1;TGCAGTGCTAGAGAACTTTCTAACTATGGCTACACCTTC
#> 1
#> TRAV38-2/DV8.TRAJ30.TRAC;TGTGCTTATAGGAGGTATGACAAGATCATCTTT_TRBV19.None.TRBJ1-2.TRBC1;TGTGCCAGTAGTATAGATCCCGGGACAGGGTACGGCTACACCTTC
#> 1
#> TRAV38-2/DV8.TRAJ44.TRAC;TGTGCTTATAGGAAGTCCGGCACTGCCAGTAAACTCACCTTT_TRBV7-9.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCTTAGTATCAGGTAGGGTCCATCCTGAAGCTTTCTTT
#> 1
#> TRAV4.TRAJ23.TRAC;TGCCTCGTGGGTGATAAATGGGGTAACCAGGGAGGAAAGCTTATCTTC_TRBV12-3.None.TRBJ1-1.TRBC1;TGTGCCAGCAGTCCGCAACGAGGGAGCCGGTACACTGAAGCTTTCTTT
#> 1
#> TRAV4.TRAJ28.TRAC;TGCCTCGTGGGGGCTTCTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV6-5.None.TRBJ2-6.TRBC2;TGTGCCAGCAGTTACTCACAGGGCTCTCGGGCCAACGTCCTGACTTTC
#> 1
#> TRAV40.TRAJ48.TRAC;TRAV29/DV5.TRAJ45.TRAC;TGTCACGCTCTGGGTTTTTTTGGAAATGAGAAATTAACCTTT;TGTGCAGCAAGCAATTCAGGAGGAGGTGCTGACGGACTCACCTTT_TRBV11-2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTAAATAGCGTCAATGAGCAGTTCTTC
#> 1
#> TRAV41.TRAJ32.TRAC;TGTGCTGTCAGACCGACCGGTGGTGCTACAAACAAGCTCATCTTT_TRBV6-5.None.TRBJ2-2.TRBC2;TGTGCCAGCAGTCCTAGGAGACGGACGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV6.TRAJ17.TRAC;TGTGCTCTAGAGGGGGCTGCAGGCAACAAGCTAACTTTT_TRBV30.None.TRBJ2-3.TRBC2;TGTGCCTGGAGTGTACCGGGAGATACGCAGTATTTT
#> 1
#> TRAV8-3.TRAJ44.TRAC;TGTGCTGTGGGCGGGGGTGGGAGCGGCACTGCCAGTAAACTCACCTTT_TRBV28.None.TRBJ1-5.TRBC1;TGTGCCAGCAGTGTTCATTGGCCCCAGCATTTT
#> 1
#> TRAV8-4.TRAJ15.TRAC;TGTGCTGTGAGTCTTAACCAGGCAGGAACTGCTCTGATCTTT_TRBV11-2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTACCCCTCAATGAGCAGTTCTTC
#> 1
#> TRAV8-4.TRAJ5.TRAC;TGTGCTGTGAGTTCGGACACGGGCAGGAGAGCACTTACTTTT_NA;NA
#> 1
#> TRAV8-6.TRAJ8.TRAC;TGTGCTGTGAGTGTAGGGACAGGCTTTCAGAAACTTGTATTT_TRBV12-4.None.TRBJ1-5.TRBC1;TGTGCCAGCAGGGCACAGGGGTCCCATCAGCCCCAGCATTTT
#> 1
#>
#> $`3`
#>
#> NA;NA_TRBV28.None.TRBJ2-6.TRBC2;TGTGCCAGCAGAGCGGGACAGGGGAGAGGGGCCAACGTCCTGACTTTC
#> 1
#> NA;NA_TRBV30.None.TRBJ2-1.TRBC2;TGTGCCTGGACCTCTGATTTGCGGCTAGCGGGGTTATACAATGAGCAGTTCTTC
#> 1
#> NA;NA_TRBV4-3.None.TRBJ2-5.TRBC2;TGCGCCAGCAGCCAGCCAGGGGTGGGGGAGACCCAGTACTTC
#> 1
#> NA;NA_TRBV6-1.None.TRBJ2-1.TRBC2;TGTGCCAGCAGACCCAACGCTGGAGCTGGGACAGGGGCAATCGATGAGCAGTTCTTC
#> 1
#> NA;NA_TRBV6-2.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTTTATCCCTCAGTGACGGCCGGCATGGCTACACCTTC
#> 1
#> NA;NA_TRBV7-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCCGGACTAGCCGACAAGAGACCCAGTACTTC
#> 1
#> TRAV1-2.TRAJ33.TRAC;TGTGCTGTGAGGGATAGCAACTATCAGTTAATCTGG_NA;NA
#> 1
#> TRAV10.TRAJ48.TRAC;TGTGTGGTGAGCGACTTTGGAAATGAGAAATTAACCTTT_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTTTAGGGTCGGGGGGGACGGGGAATGAGCAGTTCTTC
#> 1
#> TRAV12-1.TRAJ8.TRAC;TGTGTGGTGAACTCACCTACAGGCTTTCAGAAACTTGTATTT_TRBV27.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTTCTCGACAGGATAGCACAGATACGCAGTATTTT
#> 1
#> TRAV12-1.TRAJ9.TRAC;TGTGTGGTCTCCGATAATACTGGAGGCTTCAAAACTATCTTT_TRBV9.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV12-2.TRAJ12.TRAC;TGTGCCCGGAAGGTTAGGGATAGCAGCTATAAATTGATCTTC_TRBV6-4.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTGACTCCGGATACAATGAGCAGTTCTTC
#> 1
#> TRAV12-2.TRAJ12.TRAC;TGTGCCGGGGATAGCAGCTATAAATTGATCTTC_TRBV18.None.TRBJ2-2.TRBC2;TGTGCCAGCTCAGGGACTAGCGGGGAACTACTCGACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV13-1.TRAJ23.TRAC;TGTGCAGCAAGTAGTGGTAACCAGGGAGGAAAGCTTATCTTC_TRBV29-1.None.TRBJ1-1.TRBC1;TGCAGCGTTGATAGGGACAGCGAGAACACTGAAGCTTTCTTT
#> 1
#> TRAV13-1.TRAJ23.TRAC;TGTGCAGCAAGTATTCCGGAGAACCAGGGAGGAAAGCTTATCTTC_TRBV10-3.None.TRBJ2-5.TRBC2;TGTGCCATCAGCGATGGACTAGACCAAGAGACCCAGTACTTC
#> 1
#> TRAV13-1.TRAJ42.TRAC;TGTGCAGCAGCGGGAAGCCAAGGAAATCTCATCTTT_TRBV2.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTGTAGGGACTCCTAACTATGGCTACACCTTC
#> 1
#> TRAV13-1.TRAJ48.TRAC;TGTGCAGCACGTTACTTTGGAAATGAGAAATTAACCTTT_TRBV4-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCCCCCAGATCGGGGCTAGCACAGATACGCAGTATTTT
#> 1
#> TRAV13-2.TRAJ37.TRAC;TGTGCCCCGCACGATAGCAACACAGGCAAACTAATCTTT_NA;NA
#> 1
#> TRAV16.TRAJ30.TRAC;TGTGCTCTAAGTGGTAGCAGAGATGACAAGATCATCTTT_NA;NA
#> 1
#> TRAV17.TRAJ39.TRAC;TRAV41.TRAJ42.TRAC;TGTGCTACGGACGAACGTAATGCAGGCAACATGCTCACCTTT;TGTGCTGTCAGATCGGATGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV6-2.None.TRBJ1-6.TRBC1;TGTGCCAGCACCCGATGGTCATGGCGCGCTAATTCACCCCTCCACTTT
#> 1
#> TRAV17.TRAJ42.TRAC;TGTGCTACGGACGGGAATGCCGAGGGAAGCCAAGGAAATCTCATCTTT_TRBV24-1.None.TRBJ1-2.TRBC1;TRBV27.None.TRBJ2-7.TRBC2;TGTGCCACCAGTGACCAGACGACAGGACCGAACAACTATGGCTACACCTTC;TGTGCCAGCAGTTTATCGGAAGCGGGAGGCGTCGGTGCGCAGTACTTC
#> 1
#> TRAV20.TRAJ24.TRAC;TGTGCTGTGCAGGCCAATGACAGCTGGGGGAAATTGCAGTTT_TRBV7-9.None.TRBJ2-7.TRBC2;TGTGCCAGCACCCTAGTGGAGGGTGGTGACGAGCAGTACTTC
#> 1
#> TRAV20.TRAJ8.TRAC;TGTGCTGTGCGAGGAGAAGGCTTTCAGAAACTTGTATTT_TRBV6-2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTTCGCGGACTAGCGGGGGTTCCTACGAGCAGTACTTC
#> 1
#> TRAV21.TRAJ41.TRAC;TGTGCTGTGATGTCAAATTCCGGGTATGCACTCAACTTC_TRBV7-7.None.TRBJ1-1.TRBC1;TRBV6-6.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCCCATACGGGGACACTGAAGCTTTCTTT;TGTGCCAGCAGTCTCGACAGGGGTGAGACCGGGGAGCTGTTTTTT
#> 1
#> TRAV21.TRAJ9.TRAC;TGTGCTGTGAATACTGGAGGCTTCAAAACTATCTTT_TRBV5-4.None.TRBJ2-1.TRBC2;TRBV6-2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTCGGAGTACAATGAGCAGTTCTTC;TGTGCCAGCAGTTCACTTCAATTCGGTGTTGGATACGAGCAGTACTTC
#> 1
#> TRAV22.TRAJ32.TRAC;TGTGCTGTCTATGGTGGTGCTACAAACAAGCTCATCTTT_TRBV2.None.TRBJ1-1.TRBC1;TGTGCCAGCAGTGTGGGTGAAGCTTTCTTT
#> 1
#> TRAV29/DV5.TRAJ44.TRAC;TGTGCAGCAGGGGATACCGGCACTGCCAGTAAACTCACCTTT_NA;NA
#> 1
#> TRAV3.TRAJ5.TRAC;TGTGCTGAGTTAGAGACGGGCAGGAGAGCACTTACTTTT_TRBV2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTATACAGGGAAATAGAAGGGAGCAGTTCTTC
#> 1
#> TRAV35.TRAJ54.TRAC;TGTGCTGGTTCCGGAATTCAGGGAGCCCAGAAGCTGGTATTT_TRBV10-3.None.TRBJ2-5.TRBC2;TGTGCCATCAGTGGGGGGACTAGCGCCCAGCAAGAGACCCAGTACTTC
#> 1
#> TRAV38-2/DV8.TRAJ48.TRAC;TGTGCTTATAGTCGGTTCAGGGAGAAATTAACCTTT_TRBV5-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCTCAGGGGACAGGGCAAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV4.TRAJ48.TRAC;TGCCTCGTGGACTTTGGAAATGAGAAATTAACCTTT_TRBV14.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTGACCCCGGGACGGGGAAGGGGCCAGCCTACGAGCAGTACTTC
#> 1
#> TRAV5.TRAJ12.TRAC;TGTGCAGAGGGTTTTGGGAGCAGCTATAAATTGATCTTC_TRBV30.None.TRBJ2-1.TRBC2;TGTGCCTGGACCTCTGATTTGCGGCTAGCGGGGTTATACAATGAGCAGTTCTTC
#> 1
#> TRAV5.TRAJ15.TRAC;TGTGCGGAGCTAAACCAGGCAGGAACTGCTCTGATCTTT_TRBV4-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCCAAGCCCCCTTTTCAACCTCCGGGGAGCTGTTTTTT
#> 1
#> TRAV5.TRAJ33.TRAC;TRAV21.TRAJ39.TRAC;TGTGCAGAGACGCTCAAAACACTGGATAGCAACTATCAGTTAATCTGG;TGTGCTGCCGCCGATAATGCAGGCAACATGCTCACCTTT_TRBV19.None.TRBJ2-5.TRBC2;TRBV5-4.None.TRBJ1-2.TRBC1;TGTGCCAGTAGTATTACGGTTTTAGAGACCCAGTACTTC;TGTGCCGCACGCCCAGCTGCTAACTATGGCTACACCTTC
#> 1
#> TRAV6.TRAJ3.TRAC;TGTGCTCTGTACAGCAGTGCTTCCAAGATAATCTTT_TRBV5-6.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCAGGGGACTAGCGGGAGGAGGGGAGACCCAGTACTTC
#> 1
#> TRAV8-1.TRAJ33.TRAC;TRAV8-6.TRAJ23.TRAC;TGTGCCGTGAACCCGGATAGCAACTATCAGTTAATCTGG;TGTGCTGTGATCACTGAGAGGGATAACCAGGGAGGAAAGCTTATCTTC_TRBV30.None.TRBJ2-7.TRBC2;TGTGCCTGGGATGCCGGACAGCGAAACGAGCAGTACTTC
#> 1
#> TRAV8-1.TRAJ38.TRAC;TRAV12-2.TRAJ20.TRAC;TGTGCCGTGCACCCATCGTCTGCTGGCAACAACCGTAAGCTGATTTGG;TGTGCCGTGGGCGACTCTAACGACTACAAGCTCAGCTTT_TRBV3-1.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCCAAGTGGCAGGCTTTGGGTGGACCCAGTACTTC
#> 1
#> TRAV8-1.TRAJ52.TRAC;TGTGCCGAGAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV12-3.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCCTACAGGGGATCTAAGATACGAGCAGTACTTC
#> 1
#> TRAV8-3.TRAJ42.TRAC;TGTGCTGTGGGTGAGAAGGGTTATGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV12-4.None.TRBJ1-6.TRBC1;TRBV7-6.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTTTCCGACCGCCGGGTTCACCCCTCCACTTT;TGTGCCAGCCACGGCGCCAGGGGTGATGGCTTTTGTGAAAAACTGTTTTTT
#> 1
#> TRAV8-3.TRAJ52.TRAC;TGTGCTGTGATCGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV6-2.None.TRBJ1-1.TRBC1;TGTGCCAGCACCAGGACAGTTGAGAACACTGAAGCTTTCTTT
#> 1
#> TRAV9-2.TRAJ39.TRAC;TGTGCTCTGAGTGACGGGCCTCTGGTGGCAGGCAACATGCTCACCTTT_TRBV6-5.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCTCGGACAGGGGATATACAATGAGCAGTTCTTC
#> 1
#>
#> $`4`
#>
#> NA;NA_TRBV12-4.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCGGTTGAGGACAGGGGCCCTATACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV20-1.None.TRBJ1-5.TRBC1;TGCAGTGCTAGGGACAGGGGGCGTGGGGGTAACAATCAGCCCCAGCATTTT
#> 1
#> NA;NA_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCGGGGGGATTGGTACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTTCGACAGCCGCCGGCGAGCAGTACTTC
#> 1
#> NA;NA_TRBV3-1.None.TRBJ1-1.TRBC1;TGTGCCGCGGGGCAGGGGGTCATGAACACTGAAGCTTTCTTT
#> 1
#> NA;NA_TRBV9.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 3
#> TRAV12-1.TRAJ9.TRAC;TGTGTGGTCTCCGATAATACTGGAGGCTTCAAAACTATCTTT_TRBV9.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 10
#> TRAV12-3.TRAJ21.TRAC;TGTGCAATGGATCTGACAGACAACTTCAACAAATTTTACTTT_TRBV5-6.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCTTGGTTCAGGACCACTATGGCTACACCTTC
#> 1
#> TRAV13-1.TRAJ41.TRAC;TGTGCAGCAAGTAACGCCGGGTATGCACTCAACTTC_TRBV12-3.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTGGGGACCACCACGAGCAGTACTTC
#> 1
#> TRAV13-1.TRAJ43.TRAC;TGTGCAGCAACCTGGAATGACATGCGCTTT_TRBV20-1.None.TRBJ2-5.TRBC2;TGCAGTGCTGAACAGCGGGAGGGAGAGACCCAGTACTTC
#> 1
#> TRAV14/DV4.TRAJ5.TRAC;TGTGCAATGAGTCTGGACACGGGCAGGAGAGCACTTACTTTT_TRBV6-6.None.TRBJ2-5.TRBC2;TGTGCCAGCACCCTCGGGCGGGACAGCCGGGCCCAGTACTTC
#> 1
#> TRAV17.TRAJ49.TRAC;TRAV19.TRAJ15.TRAC;TGTGCTACGGACATCGGTAACCAGTTCTATTTT;TGTGCTCTGAGTGAGGCGAACCAGGCAGGAACTGCTCTGATCTTT_TRBV5-6.None.TRBJ2-4.TRBC2;TGTGCCAGCAGCCCTGGGGCAGGGCGGAACATTCAGTACTTC
#> 1
#> TRAV19.TRAJ54.TRAC;TGTGCTCTGACCCTACTCCCTATAATTCAGGGAGCCCAGAAGCTGGTATTT_TRBV19.None.TRBJ1-1.TRBC1;TGTGCCAGTAGACAGGGGTTGGGGACTGAAGCTTTCTTT
#> 1
#> TRAV2.TRAJ9.TRAC;TGTGCTGTGGAGGATCAGGTTACTGGAGGCTTCAAAACTATCTTT_TRBV3-1.None.TRBJ1-1.TRBC1;TGTGCCGCGGGGCAGGGGGTCATGAACACTGAAGCTTTCTTT
#> 1
#> TRAV20.TRAJ6.TRAC;TGTGCTGTCTATCATGCATCAGGAGGAAGCTACATACCTACATTT_TRBV7-8.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCCAGAGACATTCCGGGACAGGGAGTCAGGGCTACACCTTC
#> 1
#> TRAV21.TRAJ22.TRAC;TGTGCTGTGAGGGGGGAGACTGGTTCTGCAAGGCAACTGACCTTT_TRBV28.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTTTATTTGGAGAAAAACTGTTTTTT
#> 1
#> TRAV24.TRAJ22.TRAC;TGTGCCTCCCTATCTGGTTCTGCAAGGCAACTGACCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTCTACAGTTGCTGGCGAGCAGTACTTC
#> 1
#> TRAV27.TRAJ49.TRAC;TRAV16.TRAJ52.TRAC;TGTGCAGGAGGTTTCCTACTCGGGGGTAACCAGTTCTATTTT;TGTGCTCTAAGTGGCCTGCTGGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV20-1.None.TRBJ1-1.TRBC1;TGCAGTGCTAGAGGAAGGGGGCTAGGCACTGAAGCTTTCTTT
#> 1
#> TRAV3.TRAJ33.TRAC;TGTGCTGTGAGAGACGTCATGGATAGCAACTATCAGTTAATCTGG_TRBV9.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCGTAGATGGGGCGTCGGGAGAGACCCAGTACTTC
#> 1
#> TRAV38-2/DV8.TRAJ45.TRAC;TGCGCCGTGGAACGGGGAGGTGCTGACGGACTCACCTTT_TRBV11-2.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCTCAACCGGGGCCAGCGCTGAAGCTTTCTTT
#> 1
#> TRAV39.TRAJ43.TRAC;TGTGCCGTTGTGATCAATGACATGCGCTTT_TRBV6-5.None.TRBJ1-5.TRBC1;TGTGCCAGCAGTTCGGTGATGAGGTCCAATCAGCCCCAGCATTTT
#> 1
#> TRAV5.TRAJ44.TRAC;TGTGCAGAGACCCCTACCGGCACTGCCAGTAAACTCACCTTT_TRBV2.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCCCCGGGACTTCGAGCACAGATACGCAGTATTTT
#> 1
#> TRAV8-4.TRAJ39.TRAC;TGTGCTGTGAGTGATCAGGGTGCAGGCAACATGCTCACCTTT_TRBV24-1.None.TRBJ1-2.TRBC1;TGTGCCACCAGTGACCAGACGACAGGACCGAACAACTATGGCTACACCTTC
#> 1
#> TRAV8-6.TRAJ34.TRAC;TGTGCTGTGACCTTCCATTATAACACCGACAAGCTCATCTTT_TRBV4-1.None.TRBJ2-7.TRBC2;TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#> TRAV8-6.TRAJ8.TRAC;TGTGCTGTGAGTGATTCGAACACAGGCTTTCAGAAACTTGTATTT_TRBV20-1.None.TRBJ1-2.TRBC1;TGCAGTGCCCCTGGGACAGGGATATTTATGGTTGACTACACCTTC
#> 1
#> TRAV9-2.TRAJ52.TRAC;TGTGCTCTGACCTTCTCCAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV9.None.TRBJ1-1.TRBC1;TGTGCCAGCAGCGTAGCAGGGATAAACACTGAAGCTTTCTTT
#> 1
#>
#> $`5`
#>
#> NA;NA_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCCCACAGTAGCGGGGGAGCAGTTCTTC
#> 1
#> NA;NA_TRBV4-1.None.TRBJ2-7.TRBC2;TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV7-6.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCTTAGGCGGGCCTAAAGAGACCCAGTACTTC
#> 1
#> TRAV1-2.TRAJ20.TRAC;TGTGCTGTGAGAGATGGTGACTACAAGCTCAGCTTT_TRBV20-1.None.TRBJ1-1.TRBC1;TGCAGTTTAAAGGGGGCAGGGGACACTGAAGCTTTCTTT
#> 1
#> TRAV1-2.TRAJ8.TRAC;TGTGCTGTGAGAGATGACGGGAACACAGGCTTTCAGAAACTTGTATTT_TRBV3-1.None.TRBJ2-4.TRBC2;TGTGCCAGCAGCCAAGATTTTAACGACGGGGGCTTAAACATTCAGTACTTC
#> 1
#> TRAV10.TRAJ48.TRAC;TGTGTGGTGAGCGACTTTGGAAATGAGAAATTAACCTTT_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTTTAGGGTCGGGGGGGACGGGGAATGAGCAGTTCTTC
#> 1
#> TRAV12-1.TRAJ42.TRAC;TGTGTGGTGAACGTCCCAGGAGGACGAAGCCAAGGAAATCTCATCTTT_TRBV9.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCGTAGGGAGCGCCTCCTCCTACGAGCAGTACTTC
#> 1
#> TRAV12-2.TRAJ12.TRAC;TGTGCCCGGAAGGTTAGGGATAGCAGCTATAAATTGATCTTC_TRBV6-4.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTGACTCCGGATACAATGAGCAGTTCTTC
#> 1
#> TRAV12-2.TRAJ13.TRAC;TRAV12-2.TRAJ13.TRAC;TGTGCCAAACGCAATTCTGGGGGTTACCAGAAAGTTACCTTT;TGTGCCACACGCAATTCTGGGGGTTACCAGAAAGTTACCTTT_TRBV9.None.TRBJ2-7.TRBC2;TRBV6-2.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCCTGAGGGGACAGGCAGACGGCGAGCAGTACTTC;TGTGCCAGCAGTTTCTCAGGGAGCGGCTACACCTTC
#> 1
#> TRAV12-3.TRAJ26.TRAC;TGTGCAATGGGTTATGGTCAGAATTTTGTCTTT_TRBV6-5.None.TRBJ1-4.TRBC1;TGTGCCAGCAGGGAGGGGATGACTAATGAAAAACTGTTTTTT
#> 1
#> TRAV13-2.TRAJ28.TRAC;TGTGCAGAGAGGGACTCTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV7-6.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCTCACAGGGGGCGAGCAGTACTTC
#> 1
#> TRAV20.TRAJ13.TRAC;TGTGCTGTGCAGAATTCTGGGGGTTACCAGAAAGTTACCTTT_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTTCATTTCAGGGGAATGGGCAGTTCTTC
#> 1
#> TRAV20.TRAJ41.TRAC;TGTGCTGTGCAGGCCAATTCCGGGTATGCACTCAACTTC_TRBV10-1.None.TRBJ1-1.TRBC1;TGCGCCAGCAGCAACGGAATAAACACTGAAGCTTTCTTT
#> 1
#> TRAV21.TRAJ7.TRAC;TRAV8-4.TRAJ12.TRAC;TGTGCTGTGAGCCCTCCCTATGGGAACAACAGACTCGCTTTT;TGTGCTGTGAGTTCCTGGAGGGATAGCAGCTATAAATTGATCTTC_TRBV20-1.None.TRBJ1-6.TRBC1;TGCAGTGCACCCCTCGGGGGGTCTGGGTCACCCCTCCACTTT
#> 1
#> TRAV22.TRAJ35.TRAC;TGTGCTGTGGAGCTGATAGGCTTTGGGAATGTGCTGCATTGC_TRBV7-3.None.TRBJ2-6.TRBC2;TGTGCCAGCAGTCCGGGCCCGATGCGGTCTGGGGCCAACGTCCTGACTTTC
#> 1
#> TRAV23/DV6.TRAJ27.TRAC;TRAV13-1.TRAJ39.TRAC;TGTGCAGCAACACCTCACGCCAATGCAGGCAAATCAACCTTT;TGTGCAGCAAGTGACTTAAATGCAGGCAACATGCTCACCTTT_TRBV29-1.None.TRBJ1-2.TRBC1;TGCAGCGTTGTAACAGGGAATGGCTACACCTTC
#> 1
#> TRAV24.TRAJ22.TRAC;TGTGCCTCCCTATCTGGTTCTGCAAGGCAACTGACCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTCTACAGTTGCTGGCGAGCAGTACTTC
#> 2
#> TRAV24.TRAJ22.TRAC;TGTGCCTCCCTTTCTGGTTCTGCAAGGCAACTGACCTTT_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCCCACAGTAGCGGGGGAGCAGTTCTTC
#> 1
#> TRAV27.TRAJ33.TRAC;TGTGCAGGAAGCAACTATCAGTTAATCTGG_TRBV19.None.TRBJ2-1.TRBC2;TGTGCCAGTAGGAGGGCGGGAAGCTCCTACAATGAGCAGTTCTTC
#> 1
#> TRAV27.TRAJ58.TRAC;TGTGCAGGAGCTGCGGAAACCAGTGGCTCTAGGTTGACCTTT_TRBV12-4.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCGGTTGAGGACAGGGGCCCTATACGAGCAGTACTTC
#> 2
#> TRAV29/DV5.TRAJ16.TRAC;TGTGCAGCAAGCCTTGATGGCCAGAAGCTGCTCTTT_TRBV20-1.None.TRBJ2-5.None;TGCAGTGCTAGGGAATCGGGGGTCTATCAGTACTTC
#> 1
#> TRAV29/DV5.TRAJ36.TRAC;TRAV21.TRAJ48.TRAC;TGTGCAGCAACCGATCAAACTGGGGCAAACAACCTCTTCTTT;TGTGCTGTCCCTTTCATGGGAAATGAGAAATTAACCTTT_TRBV19.None.TRBJ1-5.TRBC1;TGTGCCAGTAGTACTGGGGACCCTACATATAGCAATCAGCCCCAGCATTTT
#> 1
#> TRAV3.TRAJ47.TRAC;TGTGCTCACATGGAATATGGAAACAAACTGGTCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCCACCCGACAGGGCGCCAAAGATACGCAGTATTTT
#> 1
#> TRAV36/DV7.TRAJ53.TRAC;TGTGCTGTGGGTGGGAGCAGTGGAGGTAGCAACTATAAACTGACATTT_TRBV5-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCTTGAGGAGCGGGGCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV36/DV7.TRAJ57.TRAC;TGTGCTGGGAGGGGCGGATCTGAAAAGCTGGTCTTT_TRBV6-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTATGACTAGCTCCTACAATGAGCAGTTCTTC
#> 1
#> TRAV41.TRAJ54.TRAC;TGTGCTGTCGGGATTCAGGGAGCCCAGAAGCTGGTATTT_TRBV6-6.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTTACTGGGGCGGGGGATATGAGGATACGCAGTATTTT
#> 1
#> TRAV5.TRAJ15.TRAC;TGTGCGGAGCTAAACCAGGCAGGAACTGCTCTGATCTTT_TRBV4-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCCAAGCCCCCTTTTCAACCTCCGGGGAGCTGTTTTTT
#> 1
#> TRAV5.TRAJ42.TRAC;TGTGCAGATATAGGAAGCCAAGGAAATCTCATCTTT_TRBV27.None.TRBJ2-3.TRBC2;TGTGCCAGCAGATTAGGAAATACGCAGTATTTT
#> 1
#> TRAV6.TRAJ40.TRAC;TGTGCTCATCGTACCTCAGGAACCTACAAATACATCTTT_TRBV6-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGTCCAACCGCACGGCCCCAAGAGTCCCAGTACTTC
#> 1
#> TRAV8-2.TRAJ43.TRAC;TGTGTTGTGAGTGAAAGCAACAATGACATGCGCTTT_TRBV13.None.TRBJ2-7.TRBC2;TRBV6-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTAAGGGGGTCTCGCTACGAGCAGTACTTC;TGTGCCAGCAGTTGGCCCCAGGGAACTAGCGGGGAGCCGTTTTACAATGAGCAGTTCTTC
#> 1
#> TRAV8-3.TRAJ42.TRAC;TGTGCTGTGGGTGAGAAGGGTTATGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV12-4.None.TRBJ1-6.TRBC1;TRBV7-6.None.TRBJ1-4.TRBC1;TGTGCCAGCAGTTTCCGACCGCCGGGTTCACCCCTCCACTTT;TGTGCCAGCCACGGCGCCAGGGGTGATGGCTTTTGTGAAAAACTGTTTTTT
#> 1
#> TRAV9-2.TRAJ29.TRAC;TGTGCTCTGAGGTCCAATTCAGGAAACACACCTCTTGTCTTT_TRBV29-1.None.TRBJ1-3.TRBC1;TGCAGCGTCGATGGTGGCTATTTGTCTGGAAACACCATATATTTT
#> 1
#>
#> $`6`
#>
#> NA;NA_TRBV24-1.None.TRBJ1-2.TRBC1;TGTGCCACCAGTGACCAGACGACAGGACCGAACAACTATGGCTACACCTTC
#> 1
#> NA;NA_TRBV5-8.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCGAAGTGAATGAGCAGTTCTTC
#> 1
#> TRAV12-1.TRAJ4.TRAC;TGTGTGGTGAACCCCGGTGGCTACAATAAGCTGATTTTT_TRBV11-1.None.TRBJ2-1.TRBC2;TGTGCCAGCACGGGACGAGGACTAGCGGGACTATCGAATGAGCAGTTCTTC
#> 1
#> TRAV12-2.TRAJ29.TRAC;TGTGCCGTGAGGATAAGCCAAGGAAACACACCTCTTGTCTTT_TRBV20-1.None.TRBJ2-4.TRBC2;TGCAGTGCTGGCCCTGGGATTCAGTACTTC
#> 1
#> TRAV12-2.TRAJ54.TRAC;TGTGCCGTGGAGGGAGCCCAGAAGCTGGTATTT_TRBV9.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCGCACTCCCCGGGCCGCCTTCCCAGCCCCAGCATTTT
#> 1
#> TRAV12-3.TRAJ48.TRAC;TGTGCATTTCCTAACTTTGGAAATGAGAAATTAACCTTT_TRBV4-2.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCCGTCGGGAGGGGGGGTACGATGGAATGAGCAGTTCTTC
#> 1
#> TRAV13-1.TRAJ15.TRAC;TRAV17.TRAJ9.TRAC;TGTGCAGCAAGTATCCAGGCAGGAACTGCTCTGATCTTT;TGTGCTACGGTTTCTACTGGAGGCTTCAAAACTATCTTT_TRBV20-1.None.TRBJ2-7.TRBC2;TRBV20-1.None.TRBJ1-2.TRBC1;TGCAGTGCTAGAGGGGGGGCGGGAGCGGACTACGAGCAGTACTTC;TGCAGTGCTAGTTTACCAGAGATTTTTAACTATGGCTACACCTTC
#> 1
#> TRAV13-1.TRAJ4.TRAC;TGTGCAGCAAAAGCGGGTGGCTACAATAAGCTGATTTTT_NA;NA
#> 1
#> TRAV13-1.TRAJ40.TRAC;TGTGCAGCGAGTATATCCTCAGGAACCTACAAATACATCTTT_TRBV24-1.None.TRBJ2-7.TRBC2;TRBV3-1.None.TRBJ1-3.TRBC1;TGTGCCACCAGTGTTGTTGCAGGGAGGAACGAGCAGTACTTC;TGTGCCAGCAAGCAACCCGGGACAGGAGGGGGAAACACCATATATTTT
#> 1
#> TRAV13-1.TRAJ6.TRAC;TGTGCAGCAAGTAAAGGAGGAAGCTACATACCTACATTT_TRBV6-2.None.TRBJ2-5.TRBC2;TGTGCCAGCTCCCGGGACGCTCTGCTGGAAACCCAGTACTTC
#> 1
#> TRAV13-2.TRAJ44.TRAC;TRAV16.TRAJ52.TRAC;TGTGCAGAGATCACAACCGGCACTGCCAGTAAACTCACCTTT;TGTGCTCTAAGTTCTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV3-1.None.TRBJ1-2.TRBC1;TRBV5-6.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCCATAAGGACAGGGCGAGTGGCTACACCTTC;TGTGCCAGCAGCTTGGGGTCGACAGGGGTATACTATGGCTACACCTTC
#> 1
#> TRAV13-2.TRAJ5.TRAC;TGTGCAGAGAATAGAAAGCCGTCGGACACGGGCAGGAGAGCACTTACTTTT_TRBV12-3.None.TRBJ2-4.TRBC2;TGTGCCAGCAGTTTGGGAGGGCAATTGGCCAAAAACATTCAGTACTTC
#> 1
#> TRAV14/DV4.TRAJ17.TRAC;TGTGCAATGAGCTCAGCTGCAGGCAACAAGCTAACTTTT_TRBV28.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTTTTCAAGGGGGCGCATCAGATACGCAGTATTTT
#> 1
#> TRAV17.TRAJ29.TRAC;TRAV12-1.TRAJ22.TRAC;TGTGCTACGGCCCGGAATTCAGGAAACACACCTCTTGTCTTT;TGTGTGCCCTCTGGTTCTGCAAGGCAACTGACCTTT_TRBV20-1.None.TRBJ1-6.TRBC1;TRBV6-2.None.TRBJ1-5.TRBC1;TGCAGTGCCATACAGGGCTCCCTCCACTTT;TGTGCCAGCAGCCCGACAGGGTTGAGCAATCAGCCCCAGCATTTT
#> 1
#> TRAV19.TRAJ39.TRAC;TGTGCTCTGAGCTTGAATAATGCAGGCAACATGCTCACCTTT_TRBV7-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCTTAGGTAGCGGGGGGGCCGTCGAGACCCAGTACTTC
#> 1
#> TRAV23/DV6.TRAJ58.TRAC;TRAV12-1.TRAJ49.TRAC;TGTGCAGCAAGCAAGAAAACCAGTGGCTCTAGGTTGACCTTT;TGTGTGGTGATGTCCCTTGGGAACACCGGTAACCAGTTCTATTTT_TRBV2.None.TRBJ1-2.TRBC1;TGTGCCAGCTGGGGGACCTTCTATGGCTACACCTTC
#> 1
#> TRAV25.TRAJ43.TRAC;TGTGCAGGGCCAGTGAATAACAATGACATGCGCTTT_TRBV3-1.None.TRBJ2-2.TRBC2;TGTGCCAGCACGTATAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV25.TRAJ49.TRAC;TRAV8-4.TRAJ58.TRAC;TGTGCAGGGCAGGGCACCGGTAACCAGTTCTATTTT;TGTGCTGTGAGTGAAGAAACCAGTGGCTCTAGGTTGACCTTT_TRBV3-1.None.TRBJ1-1.TRBC1;TRBV6-1.None.TRBJ1-6.TRBC1;TGTGCCAGCAGCCAATCGCTCCTTAAGGTTTTCTTT;TGTGCCAGCAGTGCCCTCAGGGGAAATTCACCCCTCCACTTT
#> 1
#> TRAV27.TRAJ40.TRAC;TRAV8-3.TRAJ34.TRAC;TGTGCAGGAGCCGCTGACGGAACCTACAAATACATCTTT;TGTGCTGTGGGTGCCCCGCGGAACACCGACAAGCTCATCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTCCAACCTCGGGCCTTAGTGATAACTACGAGCAGTACTTC
#> 1
#> TRAV29/DV5.TRAJ44.TRAC;TGTGCAGCAAGCGCGACCGGCACTGCCAGTAAACTCACCTTT_TRBV5-1.None.TRBJ2-1.TRBC2;TGCGCCAGCAGCTCCCTTAGCGGTGCAGACAATGAGCAGTTCTTC
#> 1
#> TRAV29/DV5.TRAJ48.TRAC;TGTGCAGCTTCTAACTTTGGAAATGAGAAATTAACCTTT_TRBV5-1.None.TRBJ1-3.TRBC1;TGCGCCAGCAGGGAACAGCTCGGCTCTGGAAACACCATATATTTT
#> 1
#> TRAV3.TRAJ4.TRAC;TGTGCTGTGAGAGACGCGTTTTCTGGTGGCTACAATAAGCTGATTTTT_TRBV6-1.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTACTCCTAGCGGGATTGGCGTTGAGCAGTTCTTC
#> 1
#> TRAV35.TRAJ49.TRAC;TGTGCTGGGCCGAACACCGGTAACCAGTTCTATTTT_TRBV4-1.None.TRBJ1-4.TRBC1;TGCGCCAGCAGCCGGGACAGGGGGCCAGTTGAAAAACTGTTTTTT
#> 1
#> TRAV39.TRAJ33.TRAC;TGTGCCGTGGACCGTTACCATAGCAACTATCAGTTAATCTGG_TRBV9.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCGTAGGTATTAGCTACGAGCAGTACTTC
#> 1
#> TRAV4.TRAJ36.TRAC;TGCCTCGTGGGTCCCCAAACTGGGGCAAACAACCTCTTCTTT_TRBV9.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCGACGGGACTAGCGGGGGGGCCAGTGAGACCCAGTACTTC
#> 1
#> TRAV4.TRAJ8.TRAC;TGCCTCGTGGGTGACAACCTGAACACAGGCTTTCAGAAACTTGTATTT_TRBV7-6.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCCCCCGACCGGGAAACACGGGCAATCAGCCCCAGCATTTT
#> 1
#> TRAV5.TRAJ28.TRAC;TGTGCAGAGAATGAGTCTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV7-3.None.TRBJ1-1.TRBC1;TRBV19.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCTTAAACAGGAACACTGAAGCTTTCTTT;TGTGCCAGTAGTCCTATCTACGGTGGCTACACCTTC
#> 1
#> TRAV8-4.TRAJ3.TRAC;TRAV2.TRAJ37.TRAC;TGTGCTGTGAGTTCCAGCAGTGCTTCCAAGATAATCTTT;TGTGCTGTGGAGGATCGGGCGGGCTCTAGCAACACAGGCAAACTAATCTTT_TRBV5-1.None.TRBJ2-1.TRBC2;TGCGCCAGCAGCGGGGGACAGGGGGCACAAAATGAGCAGTTCTTC
#> 1
#> TRAV8-6.TRAJ13.TRAC;TGTGCTGTGAGTGATACTGGGGGTTACCAGAAAGTTACCTTT_TRBV20-1.None.TRBJ1-2.TRBC1;TGCAGTGCTAGAGATGGGACAGCTTTTAACTATGGCTACACCTTC
#> 1
#>
#> $`7`
#>
#> NA;NA_TRBV19.None.TRBJ2-3.TRBC2;TGTGCCACATCTGCCCGACTAGCGGGAGGCCCGTCACAAACGCAGTATTTT
#> 1
#> NA;NA_TRBV6-1.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCGGTTTACCTGCCTACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV9.None.TRBJ2-1.TRBC2;TGTGCCAGCTCGACCGGGACAGGGAGTGAGCAGTTCTTC
#> 1
#> TRAV12-1.TRAJ4.TRAC;TGTGTGGTGAACGCGGGTGGCTACAATAAGCTGATTTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTCTCCTCGGGACGTCCCTTGGGGAGCAGTACTTC
#> 1
#> TRAV12-2.TRAJ6.TRAC;TGTGCCGTGCAGGGAGGAAGCTACATACCTACATTT_TRBV6-2.None.TRBJ2-2.TRBC2;TGTGCCAGCGGGGTAGACACCCACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV12-3.TRAJ23.TRAC;TGTGCAATGAGCGACTATAACCAGGGAGGAAAGCTTATCTTC_TRBV4-1.None.TRBJ2-7.TRBC2;TGCGCCAGCAGAGGAGGGACTAGCGGGACTTTTACCTACGAGCAGTACTTC
#> 1
#> TRAV12-3.TRAJ3.TRAC;TRAV12-1.TRAJ3.TRAC;TGTGCAAGGATGTACAGCAGTGCTTCCAAGATAATCTTT;TGTGTGGTGATCTACAGCAGTGCTTCCAAGATAATCTTT_NA;NA
#> 1
#> TRAV13-1.TRAJ57.TRAC;TGTGCAGCAAGTGGGGAGGGCGGATCTGAAAAGCTGGTCTTT_TRBV11-3.None.TRBJ1-2.TRBC1;TGTGCCAGCAGCTTAGAACAGGGTCGCGGCTACACCTTC
#> 1
#> TRAV13-2.TRAJ37.TRAC;TGTGCAGAGACGGGGCGCTCTAGCAACACAGGCAAACTAATCTTT_TRBV7-9.None.TRBJ1-2.TRBC1;TGTGCCAGCAGTACAGGGGGTGGAGGTGGCTACACCTTC
#> 1
#> TRAV14/DV4.TRAJ4.TRAC;TRAV3.TRAJ28.TRAC;TGTGCAATGAGAGAGCCCTTTTCTGGTGGCTACAATAAGCTGATTTTT;TGTGCTGCTAACTCTGGGGCTGGGAGTTACCAACTCACTTTC_TRBV12-4.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTTTAACGGCCGGGTGGATGGATGAGCAGTTCTTC
#> 1
#> TRAV14/DV4.TRAJ9.TRAC;TRAV12-1.TRAJ49.TRAC;TGTGCAATGAGAGAGGGCACGGGTACTGGAGGCTTCAAAACTATCTTT;TGTGTGGTGAACATTAACACCGGTAACCAGTTCTATTTT_TRBV4-1.None.TRBJ2-1.TRBC2;TGCGCCAGCAGCCAAGGCCTCGGACTAGCGTCGGTCTTC
#> 1
#> TRAV17.TRAJ10.TRAC;TRAV19.TRAJ16.TRAC;TGTGCTCCCAGCTACACGGGAGGAGGAAACAAACTCACCTTT;TGTGCTCTGAGTGAGATATCAGATGGCCAGAAGCTGCTCTTT_TRBV10-3.None.TRBJ1-5.TRBC1;TGTGCCATCAGTGACCCCGCAGGGGGCTTAGGTCAGCCCCAGCATTTT
#> 1
#> TRAV17.TRAJ12.TRAC;TGTGCAACGGATAGCAGCTATAAATTGATCTTC_TRBV6-1.None.TRBJ1-1.TRBC1;TGTGCCAGCAGTCAAGTACAGGGCCCTGAAGCTTTCTTT
#> 1
#> TRAV17.TRAJ45.TRAC;TGTGCTACGGCCGAATCATCAGGAGGAGGTGCTGACGGACTCACCTTT_TRBV20-1.None.TRBJ1-1.TRBC1;TGCAGTGCTAGAGATTATGAGGGGGCGAACACTGAAGCTTTCTTT
#> 1
#> TRAV20.TRAJ7.TRAC;TGTGCTGTGCAGGCGAGTGGGAACAACAGACTCGCTTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCCTAGCTCCCGTAGCTCCTACGAGCAGTACTTC
#> 1
#> TRAV26-1.TRAJ42.TRAC;TGCATCGTCAGAGTCGCGGGGGGAAGCCAAGGAAATCTCATCTTT_TRBV7-3.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCAAACGGACTAGCGGGGGAACAGATACGCAGTATTTT
#> 1
#> TRAV27.TRAJ58.TRAC;TGTGCAGGAGGTTTGGGGGCAGAAACCAGTGGCTCTAGGTTGACCTTT_TRBV28.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTCTGGACCTGGCTTATGCAGATACGCAGTATTTT
#> 1
#> TRAV29/DV5.TRAJ17.TRAC;TRAV8-1.TRAJ7.TRAC;TGTGCAGCAAGCGCGAATGTCAGGGCTGCAGGCAACAAGCTAACTTTT;TGTGCCGTGACCCCGAGGGGGAACAACAGACTCGCTTTT_TRBV2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTGGAGGCGGGGGAAAAATCTACGAGCAGTACTTC
#> 1
#> TRAV29/DV5.TRAJ36.TRAC;TRAV16.TRAJ47.TRAC;TGTGCAACCAAAACTGGGGCAAACAACCTCTTCTTT;TGTGCTCTATATGGAAACAAACTGGTCTTT_TRBV12-3.None.TRBJ1-5.TRBC1;TGTGCCAGCAGTTGGGGCCCCGGCAATCAGCCCCAGCATTTT
#> 1
#> TRAV38-2/DV8.TRAJ57.TRAC;TGTGCTTATAGGAGCGCGGGGACTCAGGGCGGATCTGAAAAGCTGGTCTTT_NA;NA
#> 1
#> TRAV8-2.TRAJ16.TRAC;TGTGTTGTGAGTGATGGCCAGAAGCTGCTCTTT_TRBV7-9.None.TRBJ1-3.TRBC1;TGTGCCAGCAGCTTCAGGGGATCTGGAAACACCATATATTTT
#> 1
#> TRAV8-3.TRAJ29.TRAC;TGTGCTGTGGGTTATTCAGGAAACACACCTCTTGTCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGGGCTGGGGGGCCCCTTAGCGAGCAGTACTTC
#> 1
#> TRAV8-3.TRAJ7.TRAC;TGTGCTGTGGACTCCTATGGGAACAACAGACTCGCTTTT_TRBV9.None.TRBJ1-2.None;TGTGCCAGCAGCGTAGGGAGCGAGGGTGGCTACACCTTC
#> 1
#> TRAV8-4.TRAJ16.TRAC;TGTGCTGTGAGTGATCGACAGTTTTCAGATGGCCAGAAGCTGCTCTTT_TRBV28.None.TRBJ1-2.TRBC1;TGTGCCAGCTCCAGCGGACAGGGGGCTTTCACCTATGGCTACACCTTC
#> 1
#> TRAV9-2.TRAJ13.TRAC;TGTGCGACTGGGGGTTACCAGAAAGTTACCTTT_TRBV30.None.TRBJ1-6.TRBC1;TGTGCCTGGGAGGGGGGGCAGAATTCACCCCTCCACTTT
#> 1
#> TRAV9-2.TRAJ35.TRAC;TGTGCTCTCGGTATAGGCTTTGGGAATGTGCTGCATTGC_TRBV20-1.None.TRBJ2-7.TRBC2;TRBV10-3.None.TRBJ2-3.TRBC2;TGCAGTGCGAACCCCAAGTCGACTTCCTACGAGCAGTACTTC;TGTGCCATCGGCTCTAGCGGGAGCACAGATACGCAGTATTTT
#> 1
#> TRAV9-2.TRAJ6.TRAC;TGTGCTCTGAGTGATCGGGTGGGAGGAAGCTACATACCTACATTT_TRBV5-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTCAGAACCCTGGCTAGCGGCTCGGCGGCCAATGAGCAGTTCTTC
#> 1
#>
#> $`8`
#>
#> NA;NA_TRBV20-1.None.TRBJ2-1.TRBC2;TGCAGTGTCCAGAGACTAGCGGGAAAAGCTGAGCAGTTCTTC
#> 1
#> NA;NA_TRBV20-1.None.TRBJ2-5.TRBC2;TGCAGTGCTAGAGTCGAAGCGCAAGAGACCCAGTACTTC
#> 1
#> NA;NA_TRBV25-1.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTGGAGGGGACAGGGGCACAGATACGCAGTATTTT
#> 1
#> NA;NA_TRBV7-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCTTAGGTGGCAGGGCGGAAGAGACCCAGTACTTC
#> 1
#> TRAV10.TRAJ34.TRAC;TGTGTGGTGAGCGATATGAACACCGACAAGCTCATCTTT_TRBV5-6.None.TRBJ2-3.TRBC2;TRBV6-2.None.TRBJ2-5.TRBC2;TGTGCCAGCAGCCTGGGACTAGCGGGCACAGATACGCAGTATTTT;TGTGCCAGCAGTTACTCCTTAGGGAACAAAAAAGAGACCCAGTACTTC
#> 1
#> TRAV12-1.TRAJ39.TRAC;TGTGTGGTGTCCTCAAATGCAGGCAACATGCTCACCTTT_TRBV5-4.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCTTGGGAGGGGAGCAGCCCCAGCATTTT
#> 1
#> TRAV12-2.TRAJ3.TRAC;TGTGCCGTGAAAGACAGCAGTGCTTCCAAGATAATCTTT_TRBV20-1.None.TRBJ1-1.TRBC1;TGCAGTGCTCACCAAGCCGGGACGAACACTGAAGCTTTCTTT
#> 1
#> TRAV12-3.TRAJ8.TRAC;TRAV29/DV5.TRAJ31.TRAC;TGTGCAATGAGCCCTAGCTTTCAGAAACTTGTATTT;TGTGCAGCAAGCGCGCGTAATAACAATGCCAGACTCATGTTT_TRBV6-1.None.TRBJ1-1.TRBC1;TRBV12-4.None.TRBJ2-2.TRBC2;TGTGCCAGCAGTCTAAGGGGGGGGAACACTGAAGCTTTCTTT;TGTGCCAGCAGTTCGACTAGCGGGAGTACCGGGGAGCTGTTTTTT
#> 1
#> TRAV13-1.TRAJ52.TRAC;TGTGCAGCAAGTCAACTGGATGGGGGTACTAGCTATGGAAAGCTGACATTT_TRBV3-1.None.TRBJ1-4.TRBC1;TGTGCCAGCAGCCAAGCGTACAGGGGGAAAAAACTGTTTTTT
#> 1
#> TRAV13-2.TRAJ7.TRAC;TGTGCAGAGAACCCCTATGGGAACAACAGACTCGCTTTT_TRBV5-6.None.TRBJ1-4.TRBC1;TGTGCCAGCAGCTTACAGGGGGCAAGTAATGAAAAACTGTTTTTT
#> 1
#> TRAV16.TRAJ44.TRAC;TGTGCTCTAAAAGTGGGCGGCACTGCCAGTAAACTCACCTTT_TRBV6-6.None.TRBJ2-6.TRBC2;TGTGCCAGCAGTGCCGGGACAGCCTCTGGGGCCAACGTCCTGACTTTC
#> 1
#> TRAV17.TRAJ47.TRAC;TGTGCTACGGACGCAATGGGGGGAAACAAACTGGTCTTT_TRBV12-3.None.TRBJ1-5.TRBC1;TGTGCCAGCAGTCCGGGACGGCGGCAATGGGGCCCCCAGCATTTT
#> 1
#> TRAV2.TRAJ36.TRAC;TGTGCTGTGGAGGCCCAAACTGGGGCAAACAACCTCTTCTTT_TRBV4-1.None.TRBJ1-1.TRBC1;TGCGCCAGCAGCCCCAGAGCCGGGACACCGAACACTGAAGCTTTCTTT
#> 1
#> TRAV21.TRAJ27.TRAC;TGTGCTGTGGAGGACACCAATGCAGGCAAATCAACCTTT_TRBV4-3.None.TRBJ1-5.TRBC1;TGCGCCAGCAGCCAAGGCCGCGATCAGCCCCAGCATTTT
#> 1
#> TRAV29/DV5.TRAJ44.TRAC;TRAV27.TRAJ29.TRAC;TGTGCAGCAAGGGCCCCCGGCACTGCCAGTAAACTCACCTTT;TGTGCAGGAGCCCCTGCTTCAGGAAACACACCTCTTGTCTTT_TRBV5-1.None.TRBJ1-2.TRBC1;TRBV7-2.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCCCAGGGCCCGGAGAGGGCTACACCTTC;TGTGCCAGCAGCTTACGTGCAGCCACGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV38-2/DV8.TRAJ52.TRAC;TGTGCTTATAGGAGCGCGCAGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TRBV10-3.None.TRBJ2-2.TRBC2;TGTGCCATCAGTGAACAGGGGAAAGGGGAGCTGTTTTTT
#> 1
#> TRAV5.TRAJ3.TRAC;TGTGCAGAGAGTATGGGGTACAGCAGTGCTTCCAAGATAATCTTT_TRBV20-1.None.TRBJ2-3.TRBC2;TGCAGTGCCCTGAGGGAGGGGACCACAGATACGCAGTATTTT
#> 1
#> TRAV8-4.TRAJ23.TRAC;TGTGCTGTGAGTGATCCTAGGAACCAGGGAGGAAAGCTTATCTTC_TRBV12-3.None.TRBJ2-3.TRBC2;TGTGCCAGCAGTTTAGCGGAGTTTGCTTACACAGATACGCAGTATTTT
#> 1
#> TRAV8-6.TRAJ29.TRAC;TGTGCTGTGAGTGAAGCCGACGGAAACACACCTCTTGTCTTT_TRBV5-4.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCGGGGGACTACACAATGAGCAGTTCTTC
#> 1
#>
#> $`9`
#>
#> NA;NA_TRBV7-9.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCTTAATGGGTGGACTAGCGGGGGCCTACACAGATACGCAGTATTTT
#> 1
#> TRAV12-1.TRAJ34.TRAC;TGTGTGGTGAACCCCACCGACAAGCTCATCTTT_TRBV9.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCGGACAGGGAGCCTACGAGCAGTACTTC
#> 1
#> TRAV24.TRAJ22.TRAC;TGTGCCTCCCTTTCTGGTTCTGCAAGGCAACTGACCTTT_TRBV27.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCCCACAGTAGCGGGGGAGCAGTTCTTC
#> 1
#> TRAV29/DV5.TRAJ30.TRAC;TGTGCAGCAAGCGACAGAGATGACAAGATCATCTTT_TRBV7-2.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCCTCACAGGGGGCCTCGGGGCAGATACGCAGTATTTT
#> 1
#> TRAV3.TRAJ15.TRAC;TRAV8-4.TRAJ22.TRAC;TGTGCTGTGAGAGACTTATGGGACTTCAACCAGGCAGGAACTGCTCTGATCTTT;TGTGCTGTTTTTGGTTCTGCAAGGCAACTGACCTTT_TRBV20-1.None.TRBJ1-1.TRBC1;TGCAGTGCCCGGGGACAGACAGCCAACACTGAAGCTTTCTTT
#> 1
#> TRAV5.TRAJ11.TRAC;TGTGCAGAGAATACAGGATACAGCACCCTCACCTTT_TRBV12-3.None.TRBJ1-1.TRBC1;TGTGCCAGCAGTCTACAGGGGGCAGGGACTGAAGCTTTCTTT
#> 1
#> TRAV5.TRAJ15.TRAC;TGTGCGGAGCTAAACCAGGCAGGAACTGCTCTGATCTTT_TRBV4-1.None.TRBJ2-2.TRBC2;TGCGCCAGCAGCCAAGCCCCCTTTTCAACCTCCGGGGAGCTGTTTTTT
#> 1
#> TRAV8-3.TRAJ34.TRAC;TGTGCTGTGGCCCCCCCCCAGGGCAACACCGACAAGCTCATCTTT_TRBV20-1.None.TRBJ2-7.TRBC2;TGCAGTATGGGCGTGCAGTCCTACGAGCAGTACTTC
#> 1
#> TRAV8-6.TRAJ34.TRAC;TGTGCTGTGACCTTCCATTATAACACCGACAAGCTCATCTTT_TRBV4-1.None.TRBJ2-7.TRBC2;TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#> TRAV9-2.TRAJ48.TRAC;TGTGCCCTTAACTTTGGAAATGAGAAATTAACCTTT_TRBV4-1.None.TRBJ1-1.TRBC1;TGCGCCAGCAGCCACACGGACAGGCCGCTCACTGAAGCTTTCTTT
#> 1
#>
#> $`10`
#>
#> NA;NA_TRBV18.None.TRBJ2-3.TRBC2;TGTGCCAGCTCACCATCTGCAGATACGCAGTATTTT
#> 1
#> NA;NA_TRBV27.None.TRBJ1-1.TRBC1;TGTGCCAGCAGTTCCCAGCGACAGGACTTGAACACTGAAGCTTTCTTT
#> 1
#> NA;NA_TRBV5-1.None.TRBJ1-6.TRBC1;TGCGCCAGCAGCCCGGCGGCAGCCAGCCTTGGGGATTCACCCCTCCACTTT
#> 1
#> NA;NA_TRBV6-2.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCCCTTTGGGGGAGGTAGAAGATACGCAGTATTTT
#> 1
#> NA;NA_TRBV7-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCTTAGAGGGTCTAGGGGGGAGGGAGCAGTTCTTC
#> 1
#> TRAV12-1.TRAJ42.TRAC;TGTGTGGTGGGCGGAGGAAGCCAAGGAAATCTCATCTTT_TRBV7-2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTTACGTCCGGCGGGCTACGAGCAGTACTTC
#> 1
#> TRAV12-2.TRAJ4.TRAC;TGTGCCGTAGGTGGAACTGGTGGCTACAATAAGCTGATTTTT_TRBV4-3.None.TRBJ2-4.TRBC2;TGCGCCAGCAGCCAAGACAGGGCCCGGCAAGGAAACATTCAGTACTTC
#> 1
#> TRAV17.TRAJ29.TRAC;TRAV12-1.TRAJ35.TRAC;TGTGCTACTGATAATTCAGGAAACACACCTCTTGTCTTT;TGTGTGGTGAACGGAGTAGGCTTTGGGAATGTGCTGCATTGC_TRBV5-1.None.TRBJ1-2.TRBC1;TGCGCCAGCAGCTTGGCCGGTACAGGGGGGGAAGGCTACACCTTC
#> 1
#> TRAV17.TRAJ57.TRAC;TGTGCTACGGTCCCTCCCCCTCAGGGCGGATCTGAAAAGCTGGTCTTT_TRBV7-9.None.TRBJ1-4.TRBC1;TGTGCCAGCAGCTTAGGACAGGGACGGGCGAGTAATGAAAAACTGTTTTTT
#> 1
#> TRAV19.TRAJ27.TRAC;TGTGCTCTGAGTGGTGCCCCTACTTATAACACCAATGCAGGCAAATCAACCTTT_TRBV29-1.None.TRBJ1-5.TRBC1;TGCAGCGTCCCAGGGGTAGGGACAGGGCCCTCTGATCAGCCCCAGCATTTT
#> 1
#> TRAV2.TRAJ16.TRAC;TGTGCTGTGACGGATGGCCAGAAGCTGCTCTTT_TRBV7-2.None.TRBJ1-2.TRBC1;TGTGCCAGCAGACTGGACAGGGGGGGGAACTATGGCTACACCTTC
#> 1
#> TRAV20.TRAJ7.TRAC;TGTGCTGTGCAGGCTCAGGGGAACAACAGACTCGCTTTT_TRBV9.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCGTGTCTAGCGGGACGAACACCGGGGAGCTGTTTTTT
#> 1
#> TRAV26-1.TRAJ3.TRAC;TGCATCGTCGTCTCGACGGGGTACAGCAGTGCTTCCAAGATAATCTTT_NA;NA
#> 1
#> TRAV35.TRAJ40.TRAC;TGTGCTGGGCATAACTCAGGAACCTACAAATACATCTTT_TRBV20-1.None.TRBJ1-5.TRBC1;TRBV20-1.None.TRBJ1-5.TRBC1;TGCAGTGCTAGGTTAACCGATCAGCCCCAGCATTTT;TGCAGTGCTAGGTTAACCGATCAGCCCCAGCATTTT
#> 1
#> TRAV41.TRAJ42.TRAC;TGTGCTGTCAGCCAAGGAAATCTCATCTTT_TRBV19.None.TRBJ2-1.TRBC2;TGTGCCAGTAGCCTCGGGACTAGCGCATACAATGAGCAGTTCTTC
#> 1
#> TRAV8-2.TRAJ8.TRAC;TGTGTTGTGACCTCCACAGGCTTTCAGAAACTTGTATTT_TRBV4-1.None.TRBJ2-3.TRBC2;TGCGCCAGCAGCCAAGAGGCAGGGGCAGATACGCAGTATTTT
#> 1
#> TRAV8-4.TRAJ30.TRAC;TGTGCTGTGAGTTTCCCTAATGACAAGATCATCTTT_TRBV13.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCCCTGCCCTACTAGCGAGAGACTCCCAGGGAGTCACAGATACGCAGTATTTT
#> 1
#> TRAV8-4.TRAJ6.TRAC;TGTGCTGTGAGTGGGAGATCAGGAGGAAGCTACATACCTACATTT_TRBV7-3.None.TRBJ1-5.TRBC1;TRBV7-8.None.TRBJ1-5.TRBC1;TGTGCCAGCAGCTTAAACTCTCGACAGCTTGGGGGTCAGCCCCAGCATTTT;TGTGCCAGCAGCTTAGAGGGACACTCCAGAGGCAATCAGCCCCAGCATTTT
#> 1
#> TRAV8-6.TRAJ30.TRAC;TGTGCTGCCTTCATGAACAGAGATGACAAGATCATCTTT_TRBV10-3.None.TRBJ2-2.TRBC2;TGTGCCATCAGTTCTACCGGGACAGGGGAAACCGGGGAGCTGTTTTTT
#> 1
#>
#> $`11`
#>
#> TRAV12-1.TRAJ21.TRAC;TGTGTGGTGAACAGCGACAACTTCAACAAATTTTACTTT_TRBV5-1.None.TRBJ2-1.TRBC2;TGCGCCAGCAGCTTGGCCGTTGGGATGCAGGTCGATGAGCAGTTCTTC
#> 1
#> TRAV23/DV6.TRAJ26.TRAC;TRAV12-2.TRAJ10.TRAC;TGTGCAGCAAGCCGCTATGGTCAGAATTTTGTCTTT;TGTGCCGTGAACATAAACGGAGGAGGAAACAAACTCACCTTT_TRBV28.None.TRBJ2-7.TRBC2;TRBV6-5.None.TRBJ2-5.TRBC2;TGTGCCAGCACCTCGCTTCTAGCGGGAGTCTACGAGCAGTACTTC;TGTGCCAGCAGTTACTCTCGGGGGGGGGGACCCCAAGAGACCCAGTACTTC
#> 1
#> TRAV41.TRAJ29.TRAC;TGTGCTGTCAAGGGAAACACACCTCTTGTCTTT_TRBV6-6.None.TRBJ2-1.TRBC2;TGTGCCAGCAGCCTAGCGGGCATCAATGAGCAGTTCTTC
#> 1
#> TRAV8-6.TRAJ57.TRAC;TGTGCTGTGAGTGAAACGGGCGGATCTGAAAAGCTGGTCTTT_TRBV6-1.None.TRBJ2-7.TRBC2;TGTGCCAGCAGAGGACGGGAAGTTCTATCCTACGAGCAGTACTTC
#> 1
#>
#> $`12`
#>
#> TRAV8-4.TRAJ39.TRAC;TGTGCTGTGAGTGAAAATAATGCAGGCAACATGCTCACCTTT_TRBV27.None.TRBJ1-2.TRBC1;TRBV18.None.TRBJ2-3.TRBC2;TGTGCCAGCACGGACAGGGGCTTTAACGGCTACACCTTC;TGTGCCAGCTCACCACCGTCGGCAGGAGGTGATACGCAGTATTTT
#> 1
#>
#> $`13`
#>
#> NA;NA_TRBV6-1.None.TRBJ2-1.TRBC2;TGTGCCAGCAGTGAAGGCGGAGGTTGGGATGAGCAGTTCTTC
#> 1
#> TRAV12-2.TRAJ6.TRAC;TGTGCCGAGAGGGGTTCGGGAGGAAGCTACATACCTACATTT_TRBV7-9.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCGACCCGAGTGGACGACAGGGTCCGAGGTGGGATACGCAGTATTTT
#> 2
#> TRAV12-2.TRAJ8.TRAC;TGTGCCCCGCACACAGGCTTTCAGAAACTTGTATTT_TRBV11-2.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCTTAGGATCGGGGGACAGATACGAGCAGTACTTC
#> 1
#> TRAV13-1.TRAJ50.TRAC;TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT_TRBV18.None.TRBJ1-2.TRBC1;TGTGCCAGCTCATCAGGGGAAAAAGGCTACACCTTC
#> 1
#> TRAV16.TRAJ30.TRAC;TGTGCTCTAAGTGGTAGCAGAGATGACAAGATCATCTTT_NA;NA
#> 1
#> TRAV16.TRAJ30.TRAC;TGTGCTCTAAGTGGTAGCAGAGATGACAAGATCATCTTT_TRBV27.None.TRBJ2-1.TRBC2;TRBV7-9.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTCCGGGGGCGGGCGTGAACAATGAGCAGTTCTTC;TGTGCCAGCCGGGGGGGGGGCGAGCAGTACTTC
#> 1
#> TRAV17.TRAJ42.TRAC;TGTGCTACGGACGGGAATGCCGAGGGAAGCCAAGGAAATCTCATCTTT_TRBV27.None.TRBJ2-7.TRBC2;TGTGCCAGCAGTTTATCGGAAGCGGGAGGCGTCGGTGCGCAGTACTTC
#> 1
#> TRAV17.TRAJ47.TRAC;TGTGCTACACAAGCCGCTCTGGAATATGGAAACAAACTGGTCTTT_TRBV10-3.None.TRBJ2-5.TRBC2;TGTGCCATCGGTGAGCGGGGGGGAAAAGCAGAGACCCAGTACTTC
#> 1
#> TRAV22.TRAJ23.TRAC;TGTGCTGCGACGGACCCGTTTTATAACCAGGGAGGAAAGCTTATCTTC_TRBV10-3.None.TRBJ2-1.TRBC2;TGTGCCATCAGTGAGTCGGGACAGGTCCCCTACAATGAGCAGTTCTTC
#> 1
#> TRAV5.TRAJ24.TRAC;TGTGCAGAAACTGACAGCTGGGGGAAATTGCAGTTT_TRBV20-1.None.TRBJ2-5.TRBC2;TGCAGTGCTTTTACAGGGGACCAGTACTTC
#> 1
#> TRAV6.TRAJ8.TRAC;TGTGCTTCAGGCTTTCAGAAACTTGTATTT_TRBV6-6.None.TRBJ1-5.TRBC1;TGTGCCAGCAGTTTCTCGACAGGGGAGGATCAGCCCCAGCATTTT
#> 1
#>
#> $`14`
#>
#> NA;NA_TRBV11-2.None.TRBJ2-2.TRBC2;TGTGCCAGCAGCTACATGGGGGGGGTCACCGGGGAGCTGTTTTTT
#> 1
#> NA;NA_TRBV18.None.TRBJ2-4.TRBC2;TGTGCCAGCTCACCAAATGGGGGACACAGTGCCAAAAACATTCAGTACTTC
#> 1
#> TRAV26-1.TRAJ23.TRAC;TGCATCGTCAGAGGTGTGATTTATAACCAGGGAGGAAAGCTTATCTTC_TRBV7-8.None.TRBJ2-2.TRBC2;TGTGCCAGCAGACAAGGGCTGGGGGAGCTGTTTTTT
#> 1
#> TRAV8-4.TRAJ3.TRAC;TGTGCTGTGAGTGCGTGGAGCAGTGCTTCCAAGATAATCTTT_NA;NA
#> 1
#>
#> $`15`
#>
#> NA;NA_TRBV20-1.None.TRBJ2-1.TRBC2;TGCAGTGCTAGAATTCCCCCGACTAGCGGGGAATACAATGAGCAGTTCTTC
#> 1
#> NA;NA_TRBV4-1.None.TRBJ1-2.TRBC1;TGCGCCAGCAGCCCCAGGGGGACAGGGGATCCCTTTGGCTACACCTTC
#> 1
#> NA;NA_TRBV5-6.None.TRBJ2-7.TRBC2;TGTGCCAGCAGCCTGGGGATCCACGAGCAGTACTTC
#> 1
#> NA;NA_TRBV7-3.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCTTAACGACAGATGCCGCAGATACGCAGTATTTT
#> 1
#> TRAV21.TRAJ53.TRAC;TGTGCTGTGTTCTGGGTGGGGAATAGTGGAGGTAGCAACTATAAACTGACATTT_NA;NA
#> 1
#> TRAV8-2.TRAJ8.TRAC;TGTGTTGTGAGTTCTATGAACACAGGCTTTCAGAAACTTGTATTT_TRBV27.None.TRBJ2-6.TRBC2;TGTGCCAGCAGGCCCCCGTCCTCTGGGGCCAACGTCCTGACTTTC
#> 1
#>
#> $`16`
#>
#> NA;NA_TRBV18.None.TRBJ2-5.TRBC2;TGTGCCAGCTCACCAACGAGACAAGAGACCCAGTACTTC
#> 1
#> TRAV10.TRAJ34.TRAC;TGTGTGGTGAGCGAGGGTTATAACACCGACAAGCTCATCTTT_TRBV7-6.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCTTAGCGCTAATCAGCGGGGGGTCCACAGATACGCAGTATTTT
#> 1
#> TRAV16.TRAJ48.TRAC;TGTGCTCTAAACACCTTTGGAAATGAGAAATTAACCTTT_TRBV7-2.None.TRBJ2-3.TRBC2;TGTGCCAGCAGCTTAAGACTAGCGGGGGGAGATACGCAGTATTTT
#> 1
#>
#> $`17`
#> < table of extent 0 >
#>
countCloneSizes(combined_pbmc, "aa")
#> $`1`
#>
#> CAAATGAAGNKLTF_CASSPTSGAADTQYF
#> 1
#> CAAKRTAQKLVF_CASSLGTTSGDGNEQFF
#> 1
#> CAAREAFNAGKSTF_CASSSSRQGNSPLHF
#> 1
#> CAARPTLSSNTGKLIF_CASSEEGRNTQYF
#> 1
#> CAASANSGGGADGLTF_CSATEYNSPLHF
#> 1
#> CAASIGYSSASKIIF_CSARPSGSTDTQYF
#> 1
#> CAASILSGGSQGNLIF;CALSGGGSQGNLIF_CSANGGAGIEAFF;CASSTWGGYQPQHF
#> 1
#> CAASISGGFKTIF;CAVRPPPSNTGKLIF_CASSNLSGRQDGQPQHF;CASSPDRVMYF
#> 1
#> CAASKLGGTYKYIF;CAYRNNAGNMLTF_CASSQSPRGGLTDTQYF;CASSPSKLGGNEQFF
#> 1
#> CAASPGGTSILTGGGNKLTF_CASMGRGRTEAFF
#> 1
#> CAASRGGANSKLTF_CASSQGGPSNTGELFF
#> 1
#> CAASTGARLMF_CASSQGAGVQPQHF
#> 1
#> CAAVNNDMRF_CSVRGLAGITDTQYF
#> 1
#> CAEIRGSNYKLTF;CAGPSTQGGSEKLVF_CASSVFQVNEKLFF
#> 1
#> CAENINTGGFKTIF_CASSPKKGPSETQYF
#> 1
#> CAETTSGRLMF;CALRPNDYKLSF_CSASLGGGRQNTGELFF
#> 1
#> CAFMKRGSFGNEKLTF_CASSPGQPIYNEQFF
#> 1
#> CAFMTKTSGSRLTF_CSPQGAAKGTDTQYF
#> 1
#> CAGATAGGGNKLTF_CASTFRDTRDTQYF
#> 1
#> CAGEGGSYIPTF_CASSLDFPRKYF;CASSPQTDFNQPQHF
#> 1
#> CAGGTGGFKTIF_CASSLVYGYTEAFF
#> 1
#> CAGKWDDKIIF_CASSRGLENTEAFF
#> 1
#> CALLSYGGSQGNLIF_CASSLEGGNQPQHF
#> 1
#> CALREGSGGYQKVTF;CAVRPGGGGTASKLTF_CASSPPTGGTNTEAFF;CASGLALGGVLDQETQYF
#> 1
#> CALRGPGTYKYIF_CAWSVWTADTEAFF
#> 1
#> CAMREGSSGMKTSYDKVIF;CGIDSNYQLIW_CASSFGLQGLGDEQYF
#> 1
#> CAMRPAGNQGGKLIF;CAASAGGNAGGTSYGKLTF_CSARQPSNEKLFF
#> 1
#> CAMRSTGTASKLTF_CSGAGGVGETQYF
#> 1
#> CAMSGSAGGTSYGKLTF_CSGSGTSHNEQFF;CASSLVRGDNEKLFF
#> 1
#> CAMSTGGFKTIF_CASSIYSGAPYEQYF
#> 1
#> CAPMDSSYKLIF_CASRDGGGDTEAFF
#> 1
#> CATDLYSTLTF_CATSRAENTEAFF
#> 1
#> CATLETSGSRLTF_CASSLNVGGRTAF
#> 1
#> CAVIGSARQLTF_CSVKVPASGDEQFF;CASSEGQGSRGYTF
#> 1
#> CAVILFSGGYNKLIF_CASSPGNTEAFF
#> 1
#> CAVKGGGSNYKLTF;CVVTGNTGGFKTIF_CASTLDGYEQYF;CASSIHGTSGRMGTDTQYF
#> 1
#> CAVNARRGSTLGRLYF;CALGTIYNQGGKLIF_CASSLASGNTDTQYF;CASSESGRGQGKLFF
#> 1
#> CAVNFGGSSGDKLTF_CASSWFRGGTDTQYF
#> 1
#> CAVNIPLNQGGKLIF;CAVERSRGSTLGRLYF_CSVSMGDSEAFF
#> 1
#> CAVNIWHRSNYKLTF_CASSSQGPTDTQYF
#> 1
#> CAVNMGEYGNKLVF_CATSDGGTIEAFF
#> 1
#> CAVNNAGNMLTF;CVVSVNTGGFKTIF_CASTRQGRGETQYF;CASSISSYGYTF
#> 1
#> CAVNRRGYSTLTF_CASGLVPPGQLSYEQYF
#> 1
#> CAVNTGGFKTIF_CSVEVRRGAYEQYF
#> 1
#> CAVNVWDAGGTSYGKLTF_CASSINGWVAGNEQFF
#> 1
#> CAVPTMDSNYQLIW_CAWTPTRVSSKLFF
#> 1
#> CAVQAGYAGGTSYGKLTF_CASRLTGTRGGELFF
#> 1
#> CAVQAHTGGFKTIF_CASPREGGDYGYTF
#> 1
#> CAVQGTGAGSYQLTF_CASSLDGKGYTF
#> 1
#> CAVRDFQGSSGSARQLTF_CASSVAPAGSTDTQYF
#> 1
#> CAVRKRGGGADGLTF_CSARDSGGLTDTQYF
#> 1
#> CAVRTNRDDKIIF_CASSLGGAGTDTQYF
#> 1
#> CAVRYGRGGTASKLTF_CASSRDYLRIRTATNEKLFF
#> 1
#> CAVSDLNDMRF_CSATTDSGTVQETQYF
#> 1
#> CAVSEDDYKLSF_CASSGGTLSTDTQYF
#> 1
#> CAVSNTGNQFYF_CASSEPGIDTQYF
#> 1
#> CAVVIGAGSYQLTF_CASSPGGGRYEQYF
#> 1
#> CAYRRPTYNQGGKLIF_CASTFPRAPQTQYF;CASSRRDRGPEKLFF
#> 1
#> CAYRSIGGATNKLIF_CASSPGTGHGYTF;CAWRFLYTEAFF
#> 1
#> CAYTNYGGSQGNLIF_CAISGGPYEQYF
#> 1
#> CGADKGNTPLVF_CASRFAYEQYF
#> 1
#> CIARGGYNNARLMF_CSARERLDSPLHF
#> 1
#> CIAVKAAGNKLTF_CASSVQSSYNEQFF
#> 1
#> CILGSNYQLIW;CAEVGANSKLTF_CASSFGGQGAKGGYTF
#> 1
#> CIVRANRDDKIIF_CASSLTRGHDGYTF
#> 1
#> CIVRANRDDKIIF_CSARRPAKYEQYF
#> 1
#> CIVVSQAGTALIF_CASSLRVNTEAFF
#> 1
#> CLVGDNNNARLMF_CSAEEPRGTGELFF
#> 1
#> CRLNARLMF_CASSYSTGYEQFF
#> 1
#> CVVNTPGGSYIPTF_CASSLVDGGLEPQHF
#> 1
#> CVVSGGGSYIPTF_CSAPKEGLMWTSDGTDTQYF
#> 1
#> NA_CASSFLGTVRKNIQYF
#> 1
#> NA_CASSIAPQGGKNIQYF
#> 1
#> NA_CASSLGQGVRETQYF
#> 1
#> NA_CASSYSPTGARNTIYF
#> 1
#>
#> $`2`
#>
#> CAAGGGATNKLIF;CALSDRSGKLIF_CASRSGANYEQYF
#> 1
#> CAARDTGGFKTIF_CASSSQMNTEAFF
#> 1
#> CAASFGGHGSSNTGKLIF;CAYRSASTGKLIF_CASSVDRGFGGELFF;CASSLSEGAQRGSTDTQYF
#> 1
#> CAASGGGGSQGNLIF;CAVGSGGYNKLIF_CASSTGDTMREQFF;CAWGGTVNTEAFF
#> 1
#> CAASISNYGQNFVF_CASSLGGNTEAFF
#> 1
#> CAASLSNFGNEKLTF_CASSRLADNEQFF
#> 1
#> CAENINQAGTALIF;CVVKSWGKLQF_CASSLEGQDYNSPLHF;CASSPTQAPSGNTIYF
#> 1
#> CAENNPGNLIF_CASSAWGNYGYTF
#> 1
#> CAGGAGTASKLTF_CSAESGLRTFTDTQYF
#> 1
#> CAGRFLNTGKLIF_CASSERLAGYNEQFF
#> 1
#> CAGSTGNQFYF_CASRTFGGRGDEQFF
#> 1
#> CAGWSDYKLSF_CASSLPTGGASNEQFF
#> 1
#> CALEGAAGNKLTF_CAWSVPGDTQYF
#> 1
#> CALILTGGGNKLTF_CASSYGRTGYRNTIYF
#> 1
#> CALIVGRANFGNEKLTF;CAVSDDNQGGKLIF_CASSSLAGSDTQYF
#> 1
#> CALRIGFGNVLHC;CVVSYNSGGYQKVTF_CASSLMGSYEQYF
#> 1
#> CALRYNFNKFYF_CASSRGVAVPNTGELFF
#> 1
#> CALSGGYGNKLVF_CASSSGQGPWNKF
#> 1
#> CAMREGPGFGNVLHC_CASSSNVHTGPNSPLHF
#> 1
#> CAMRGTGGSNYKLTF_CASSLGRSNEQFF
#> 1
#> CAMRVVLGAGNNRKLIW_CASSLGLAGVRETQYF
#> 1
#> CAMSDASGSARQLTF_CAWSVPPLTTGFGNTEAFF
#> 1
#> CAPANQAGTALIF_CASSLTGNYGYTF;CASHGARGDGFCEKLFF
#> 1
#> CAPRAGGSYIPTF_CASSLPRTGDTEAFF
#> 1
#> CASGGSYIPTF_CASSSLGGTSNTGELFF;CASSLNPGEKLFF
#> 1
#> CAVGGGGSGTASKLTF_CASSVHWPQHF
#> 1
#> CAVNDNMLTF_CASSFSGTGGEKLFF
#> 1
#> CAVNPNSGNTPLVF_CASSQGQSSQLAETQYF
#> 1
#> CAVRAFIGFGNVLHC_CASSFVPGTPGYSGANVLTF
#> 1
#> CAVRAGAAGNKLTF_CSARELSNYGYTF
#> 1
#> CAVRAGSYQLTF_CASTQNTGELFF
#> 1
#> CAVRPTGGATNKLIF_CASSPRRRTNTGELFF
#> 1
#> CAVSLNQAGTALIF_CASSLPLNEQFF
#> 1
#> CAVSSDTGRRALTF_NA
#> 1
#> CAVSVGTGFQKLVF_CASRAQGSHQPQHF
#> 1
#> CAYRKSGTASKLTF_CASSLVSGRVHPEAFF
#> 1
#> CAYRRYDKIIF_CASSIDPGTGYGYTF
#> 1
#> CHALGFFGNEKLTF;CAASNSGGGADGLTF_CASSLNSVNEQFF
#> 1
#> CILSPPTDSWGKLQF_CAWRWRHSPLHF
#> 1
#> CIVRVEGGNYGQNFVF_CASSQDSIGSGNTIYF
#> 1
#> CLVGASGAGSYQLTF_CASSYSQGSRANVLTF
#> 1
#> CLVGDKWGNQGGKLIF_CASSPQRGSRYTEAFF
#> 1
#> NA_CASSFGSSGGYYEQYF
#> 1
#> NA_CASTLDSSYEQYF;CATKLAGGRQTQYF
#> 1
#> NA_CATSEGGDTEAFF
#> 1
#>
#> $`3`
#>
#> CAAAGSQGNLIF_CASSVGTPNYGYTF
#> 1
#> CAAGDTGTASKLTF_NA
#> 1
#> CAARYFGNEKLTF_CASSPQIGASTDTQYF
#> 1
#> CAASIPENQGGKLIF_CAISDGLDQETQYF
#> 1
#> CAASSGNQGGKLIF_CSVDRDSENTEAFF
#> 1
#> CAEGFGSSYKLIF_CAWTSDLRLAGLYNEQFF
#> 1
#> CAELETGRRALTF_CASSIQGNRREQFF
#> 1
#> CAELNQAGTALIF_CASSQAPFSTSGELFF
#> 1
#> CAENAGGTSYGKLTF_CASSPTGDLRYEQYF
#> 1
#> CAETLKTLDSNYQLIW;CAAADNAGNMLTF_CASSITVLETQYF;CAARPAANYGYTF
#> 1
#> CAGDSSYKLIF_CASSGTSGELLDTGELFF
#> 1
#> CAGSGIQGAQKLVF_CAISGGTSAQQETQYF
#> 1
#> CALSDGPLVAGNMLTF_CASSLGQGIYNEQFF
#> 1
#> CALSGSRDDKIIF_NA
#> 1
#> CALYSSASKIIF_CASSRGLAGGGETQYF
#> 1
#> CAPHDSNTGKLIF_NA
#> 1
#> CARKVRDSSYKLIF_CASSDSGYNEQFF
#> 1
#> CATDERNAGNMLTF;CAVRSDGGSQGNLIF_CASTRWSWRANSPLHF
#> 1
#> CATDGNAEGSQGNLIF_CATSDQTTGPNNYGYTF;CASSLSEAGGVGAQYF
#> 1
#> CAVGEKGYGGSQGNLIF_CASSFRPPGSPLHF;CASHGARGDGFCEKLFF
#> 1
#> CAVHPSSAGNNRKLIW;CAVGDSNDYKLSF_CASSQVAGFGWTQYF
#> 1
#> CAVIGGTSYGKLTF_CASTRTVENTEAFF
#> 1
#> CAVMSNSGYALNF_CASSPYGDTEAFF;CASSLDRGETGELFF
#> 1
#> CAVNPDSNYQLIW;CAVITERDNQGGKLIF_CAWDAGQRNEQYF
#> 1
#> CAVNTGGFKTIF_CASSSEYNEQFF;CASSSLQFGVGYEQYF
#> 1
#> CAVQANDSWGKLQF_CASTLVEGGDEQYF
#> 1
#> CAVRDSNYQLIW_NA
#> 1
#> CAVRGEGFQKLVF_CASSSRTSGGSYEQYF
#> 1
#> CAVYGGATNKLIF_CASSVGEAFF
#> 1
#> CAYSRFREKLTF_CASSSGDRANTGELFF
#> 1
#> CLVDFGNEKLTF_CASSDPGTGKGPAYEQYF
#> 1
#> CVVNSPTGFQKLVF_CASSSRQDSTDTQYF
#> 1
#> CVVSDFGNEKLTF_CASSLGSGGTGNEQFF
#> 1
#> CVVSDNTGGFKTIF_CASSVRRERANTGELFF
#> 1
#> NA_CASRAGQGRGANVLTF
#> 1
#> NA_CASRPNAGAGTGAIDEQFF
#> 1
#> NA_CASSLSLSDGRHGYTF
#> 1
#> NA_CASSQPGVGETQYF
#> 1
#> NA_CASSRTSRQETQYF
#> 1
#> NA_CAWTSDLRLAGLYNEQFF
#> 1
#>
#> $`4`
#>
#> CAASNAGYALNF_CASSGDHHEQYF
#> 1
#> CAATWNDMRF_CSAEQREGETQYF
#> 1
#> CAETPTGTASKLTF_CASSPGTSSTDTQYF
#> 1
#> CAGGFLLGGNQFYF;CALSGLLGGTSYGKLTF_CSARGRGLGTEAFF
#> 1
#> CALTFSNAGGTSYGKLTF_CASSVAGINTEAFF
#> 1
#> CALTLLPIIQGAQKLVF_CASRQGLGTEAFF
#> 1
#> CAMDLTDNFNKFYF_CASSLVQDHYGYTF
#> 1
#> CAMSLDTGRRALTF_CASTLGRDSRAQYF
#> 1
#> CASLSGSARQLTF_CASSSTVAGEQYF
#> 1
#> CATDIGNQFYF;CALSEANQAGTALIF_CASSPGAGRNIQYF
#> 1
#> CAVEDQVTGGFKTIF_CAAGQGVMNTEAFF
#> 1
#> CAVERGGADGLTF_CASSSTGASAEAFF
#> 1
#> CAVRDVMDSNYQLIW_CASSVDGASGETQYF
#> 1
#> CAVRGETGSARQLTF_CASSLFGEKLFF
#> 1
#> CAVSDQGAGNMLTF_CATSDQTTGPNNYGYTF
#> 1
#> CAVSDSNTGFQKLVF_CSAPGTGIFMVDYTF
#> 1
#> CAVTFHYNTDKLIF_CASSQDRTGLDYEQYF
#> 1
#> CAVVINDMRF_CASSSVMRSNQPQHF
#> 1
#> CAVYHASGGSYIPTF_CASSQRHSGTGSQGYTF
#> 1
#> CVVSDNTGGFKTIF_CASSVRRERANTGELFF
#> 10
#> NA_CAAGQGVMNTEAFF
#> 1
#> NA_CASSRGDWYEQYF
#> 1
#> NA_CASSRLRTGALYEQYF
#> 1
#> NA_CASSSTAAGEQYF
#> 1
#> NA_CASSVRRERANTGELFF
#> 3
#> NA_CSARDRGRGGNNQPQHF
#> 1
#>
#> $`5`
#>
#> CAASLDGQKLLF_CSARESGVYQYF
#> 1
#> CAATDQTGANNLFF;CAVPFMGNEKLTF_CASSTGDPTYSNQPQHF
#> 1
#> CAATPHANAGKSTF;CAASDLNAGNMLTF_CSVVTGNGYTF
#> 1
#> CADIGSQGNLIF_CASRLGNTQYF
#> 1
#> CAELNQAGTALIF_CASSQAPFSTSGELFF
#> 1
#> CAERDSGAGSYQLTF_CASSLTGGEQYF
#> 1
#> CAGAAETSGSRLTF_CASSRLRTGALYEQYF
#> 2
#> CAGRGGSEKLVF_CASSMTSSYNEQFF
#> 1
#> CAGSNYQLIW_CASRRAGSSYNEQFF
#> 1
#> CAHMEYGNKLVF_CSATRQGAKDTQYF
#> 1
#> CAHRTSGTYKYIF_CASSPTARPQESQYF
#> 1
#> CAKRNSGGYQKVTF;CATRNSGGYQKVTF_CASSLRGQADGEQYF;CASSFSGSGYTF
#> 1
#> CALRSNSGNTPLVF_CSVDGGYLSGNTIYF
#> 1
#> CAMGYGQNFVF_CASREGMTNEKLFF
#> 1
#> CARKVRDSSYKLIF_CASSDSGYNEQFF
#> 1
#> CASLSGSARQLTF_CASSPTVAGEQFF
#> 1
#> CASLSGSARQLTF_CASSSTVAGEQYF
#> 2
#> CAVELIGFGNVLHC_CASSPGPMRSGANVLTF
#> 1
#> CAVGEKGYGGSQGNLIF_CASSFRPPGSPLHF;CASHGARGDGFCEKLFF
#> 1
#> CAVGGSSGGSNYKLTF_CASSLRSGANTGELFF
#> 1
#> CAVGIQGAQKLVF_CASSYWGGGYEDTQYF
#> 1
#> CAVQANSGYALNF_CASSNGINTEAFF
#> 1
#> CAVQNSGGYQKVTF_CASSSFQGNGQFF
#> 1
#> CAVRDDGNTGFQKLVF_CASSQDFNDGGLNIQYF
#> 1
#> CAVRDGDYKLSF_CSLKGAGDTEAFF
#> 1
#> CAVSPPYGNNRLAF;CAVSSWRDSSYKLIF_CSAPLGGSGSPLHF
#> 1
#> CVVNVPGGRSQGNLIF_CASSVGSASSYEQYF
#> 1
#> CVVSDFGNEKLTF_CASSLGSGGTGNEQFF
#> 1
#> CVVSESNNDMRF_CASSLRGSRYEQYF;CASSWPQGTSGEPFYNEQFF
#> 1
#> NA_CASSLGGPKETQYF
#> 1
#> NA_CASSPTVAGEQFF
#> 1
#> NA_CASSQDRTGLDYEQYF
#> 1
#>
#> $`6`
#>
#> CAAKAGGYNKLIF_NA
#> 1
#> CAASATGTASKLTF_CASSSLSGADNEQFF
#> 1
#> CAASIQAGTALIF;CATVSTGGFKTIF_CSARGGAGADYEQYF;CSASLPEIFNYGYTF
#> 1
#> CAASISSGTYKYIF_CATSVVAGRNEQYF;CASKQPGTGGGNTIYF
#> 1
#> CAASKGGSYIPTF_CASSRDALLETQYF
#> 1
#> CAASKKTSGSRLTF;CVVMSLGNTGNQFYF_CASWGTFYGYTF
#> 1
#> CAASNFGNEKLTF_CASREQLGSGNTIYF
#> 1
#> CAEITTGTASKLTF;CALSSNAGGTSYGKLTF_CASSHKDRASGYTF;CASSLGSTGVYYGYTF
#> 1
#> CAENESGAGSYQLTF_CASSLNRNTEAFF;CASSPIYGGYTF
#> 1
#> CAENRKPSDTGRRALTF_CASSLGGQLAKNIQYF
#> 1
#> CAFPNFGNEKLTF_CASSPSGGGVRWNEQFF
#> 1
#> CAGAADGTYKYIF;CAVGAPRNTDKLIF_CASSPTSGLSDNYEQYF
#> 1
#> CAGPNTGNQFYF_CASSRDRGPVEKLFF
#> 1
#> CAGPVNNNDMRF_CASTYNTGELFF
#> 1
#> CAGQGTGNQFYF;CAVSEETSGSRLTF_CASSQSLLKVFF;CASSALRGNSPLHF
#> 1
#> CALSLNNAGNMLTF_CASSLGSGGAVETQYF
#> 1
#> CAMSSAAGNKLTF_CASSFQGGASDTQYF
#> 1
#> CATARNSGNTPLVF;CVPSGSARQLTF_CSAIQGSLHF;CASSPTGLSNQPQHF
#> 1
#> CAVDRYHSNYQLIW_CASSVGISYEQYF
#> 1
#> CAVEGAQKLVF_CASSALPGPPSQPQHF
#> 1
#> CAVRDAFSGGYNKLIF_CASSTPSGIGVEQFF
#> 1
#> CAVRISQGNTPLVF_CSAGPGIQYF
#> 1
#> CAVSDTGGYQKVTF_CSARDGTAFNYGYTF
#> 1
#> CAVSSSSASKIIF;CAVEDRAGSSNTGKLIF_CASSGGQGAQNEQFF
#> 1
#> CLVGDNLNTGFQKLVF_CASSPRPGNTGNQPQHF
#> 1
#> CLVGPQTGANNLFF_CASSDGTSGGASETQYF
#> 1
#> CVVNPGGYNKLIF_CASTGRGLAGLSNEQFF
#> 1
#> NA_CASSEVNEQFF
#> 1
#> NA_CATSDQTTGPNNYGYTF
#> 1
#>
#> $`7`
#>
#> CAASANVRAAGNKLTF;CAVTPRGNNRLAF_CASSGGGGKIYEQYF
#> 1
#> CAASGEGGSEKLVF_CASSLEQGRGYTF
#> 1
#> CAETGRSSNTGKLIF_CASSTGGGGGYTF
#> 1
#> CAGGLGAETSGSRLTF_CASSLDLAYADTQYF
#> 1
#> CALGIGFGNVLHC_CSANPKSTSYEQYF;CAIGSSGSTDTQYF
#> 1
#> CALSDRVGGSYIPTF_CASSFRTLASGSAANEQFF
#> 1
#> CAMREGTGTGGFKTIF;CVVNINTGNQFYF_CASSQGLGLASVF
#> 1
#> CAMREPFSGGYNKLIF;CAANSGAGSYQLTF_CASSLTAGWMDEQFF
#> 1
#> CAMSDYNQGGKLIF_CASRGGTSGTFTYEQYF
#> 1
#> CAPSYTGGGNKLTF;CALSEISDGQKLLF_CAISDPAGGLGQPQHF
#> 1
#> CARMYSSASKIIF;CVVIYSSASKIIF_NA
#> 1
#> CATAESSGGGADGLTF_CSARDYEGANTEAFF
#> 1
#> CATDSSYKLIF_CASSQVQGPEAFF
#> 1
#> CATGGYQKVTF_CAWEGGQNSPLHF
#> 1
#> CATKTGANNLFF;CALYGNKLVF_CASSWGPGNQPQHF
#> 1
#> CAVDSYGNNRLAF_CASSVGSEGGYTF
#> 1
#> CAVGYSGNTPLVF_CASRAGGPLSEQYF
#> 1
#> CAVQASGNNRLAF_CASSPSSRSSYEQYF
#> 1
#> CAVQGGSYIPTF_CASGVDTHTGELFF
#> 1
#> CAVSDRQFSDGQKLLF_CASSSGQGAFTYGYTF
#> 1
#> CAYRSAGTQGGSEKLVF_NA
#> 1
#> CIVRVAGGSQGNLIF_CASSKRTSGGTDTQYF
#> 1
#> CVVNAGGYNKLIF_CASSLLGTSLGEQYF
#> 1
#> CVVSDGQKLLF_CASSFRGSGNTIYF
#> 1
#> NA_CASSGLPAYEQYF
#> 1
#> NA_CASSTGTGSEQFF
#> 1
#> NA_CATSARLAGGPSQTQYF
#> 1
#>
#> $`8`
#>
#> CAARAPGTASKLTF;CAGAPASGNTPLVF_CASSPGPGEGYTF;CASSLRAATNTGELFF
#> 1
#> CAASQLDGGTSYGKLTF_CASSQAYRGKKLFF
#> 1
#> CAENPYGNNRLAF_CASSLQGASNEKLFF
#> 1
#> CAESMGYSSASKIIF_CSALREGTTDTQYF
#> 1
#> CALKVGGTASKLTF_CASSAGTASGANVLTF
#> 1
#> CAMSPSFQKLVF;CAASARNNNARLMF_CASSLRGGNTEAFF;CASSSTSGSTGELFF
#> 1
#> CATDAMGGNKLVF_CASSPGRRQWGPQHF
#> 1
#> CAVEAQTGANNLFF_CASSPRAGTPNTEAFF
#> 1
#> CAVEDTNAGKSTF_CASSQGRDQPQHF
#> 1
#> CAVKDSSASKIIF_CSAHQAGTNTEAFF
#> 1
#> CAVSDPRNQGGKLIF_CASSLAEFAYTDTQYF
#> 1
#> CAVSEADGNTPLVF_CASSGGLHNEQFF
#> 1
#> CAYRSAQAGGTSYGKLTF_CAISEQGKGELFF
#> 1
#> CVVSDMNTDKLIF_CASSLGLAGTDTQYF;CASSYSLGNKKETQYF
#> 1
#> CVVSSNAGNMLTF_CASSLGGEQPQHF
#> 1
#> NA_CASSGGDRGTDTQYF
#> 1
#> NA_CASSLGGRAEETQYF
#> 1
#> NA_CSARVEAQETQYF
#> 1
#> NA_CSVQRLAGKAEQFF
#> 1
#>
#> $`9`
#>
#> CAASDRDDKIIF_CASSLTGGLGADTQYF
#> 1
#> CAELNQAGTALIF_CASSQAPFSTSGELFF
#> 1
#> CAENTGYSTLTF_CASSLQGAGTEAFF
#> 1
#> CALNFGNEKLTF_CASSHTDRPLTEAFF
#> 1
#> CASLSGSARQLTF_CASSPTVAGEQFF
#> 1
#> CAVAPPQGNTDKLIF_CSMGVQSYEQYF
#> 1
#> CAVRDLWDFNQAGTALIF;CAVFGSARQLTF_CSARGQTANTEAFF
#> 1
#> CAVTFHYNTDKLIF_CASSQDRTGLDYEQYF
#> 1
#> CVVNPTDKLIF_CASSGQGAYEQYF
#> 1
#> NA_CASSLMGGLAGAYTDTQYF
#> 1
#>
#> $`10`
#>
#> CAAFMNRDDKIIF_CAISSTGTGETGELFF
#> 1
#> CAGHNSGTYKYIF_CSARLTDQPQHF;CSARLTDQPQHF
#> 1
#> CALSGAPTYNTNAGKSTF_CSVPGVGTGPSDQPQHF
#> 1
#> CATDNSGNTPLVF;CVVNGVGFGNVLHC_CASSLAGTGGEGYTF
#> 1
#> CATVPPPQGGSEKLVF_CASSLGQGRASNEKLFF
#> 1
#> CAVGGTGGYNKLIF_CASSQDRARQGNIQYF
#> 1
#> CAVQAQGNNRLAF_CASSVSSGTNTGELFF
#> 1
#> CAVSFPNDKIIF_CASSPALLARDSQGVTDTQYF
#> 1
#> CAVSGRSGGSYIPTF_CASSLNSRQLGGQPQHF;CASSLEGHSRGNQPQHF
#> 1
#> CAVSQGNLIF_CASSLGTSAYNEQFF
#> 1
#> CAVTDGQKLLF_CASRLDRGGNYGYTF
#> 1
#> CIVVSTGYSSASKIIF_NA
#> 1
#> CVVGGGSQGNLIF_CASSLRPAGYEQYF
#> 1
#> CVVTSTGFQKLVF_CASSQEAGADTQYF
#> 1
#> NA_CASSLEGLGGREQFF
#> 1
#> NA_CASSPAAASLGDSPLHF
#> 1
#> NA_CASSPLGEVEDTQYF
#> 1
#> NA_CASSPSADTQYF
#> 1
#> NA_CASSSQRQDLNTEAFF
#> 1
#>
#> $`11`
#>
#> CAASRYGQNFVF;CAVNINGGGNKLTF_CASTSLLAGVYEQYF;CASSYSRGGGPQETQYF
#> 1
#> CAVKGNTPLVF_CASSLAGINEQFF
#> 1
#> CAVSETGGSEKLVF_CASRGREVLSYEQYF
#> 1
#> CVVNSDNFNKFYF_CASSLAVGMQVDEQFF
#> 1
#>
#> $`12`
#>
#> CAVSENNAGNMLTF_CASTDRGFNGYTF;CASSPPSAGGDTQYF
#> 1
#>
#> $`13`
#>
#> CAASETSYDKVIF_CASSSGEKGYTF
#> 1
#> CAATDPFYNQGGKLIF_CAISESGQVPYNEQFF
#> 1
#> CAERGSGGSYIPTF_CASSDPSGRQGPRWDTQYF
#> 2
#> CAETDSWGKLQF_CSAFTGDQYF
#> 1
#> CALSGSRDDKIIF_CASSPGAGVNNEQFF;CASRGGGEQYF
#> 1
#> CALSGSRDDKIIF_NA
#> 1
#> CAPHTGFQKLVF_CASSLGSGDRYEQYF
#> 1
#> CASGFQKLVF_CASSFSTGEDQPQHF
#> 1
#> CATDGNAEGSQGNLIF_CASSLSEAGGVGAQYF
#> 1
#> CATQAALEYGNKLVF_CAIGERGGKAETQYF
#> 1
#> NA_CASSEGGGWDEQFF
#> 1
#>
#> $`14`
#>
#> CAVSAWSSASKIIF_NA CIVRGVIYNQGGKLIF_CASRQGLGELFF
#> 1 1
#> NA_CASSPNGGHSAKNIQYF NA_CASSYMGGVTGELFF
#> 1 1
#>
#> $`15`
#>
#> CAVFWVGNSGGSNYKLTF_NA CVVSSMNTGFQKLVF_CASRPPSSGANVLTF
#> 1 1
#> NA_CASSLGIHEQYF NA_CASSLTTDAADTQYF
#> 1 1
#> NA_CASSPRGTGDPFGYTF NA_CSARIPPTSGEYNEQFF
#> 1 1
#>
#> $`16`
#>
#> CALNTFGNEKLTF_CASSLRLAGGDTQYF CVVSEGYNTDKLIF_CASSLALISGGSTDTQYF
#> 1 1
#> NA_CASSPTRQETQYF
#> 1
#>
#> $`17`
#> < table of extent 0 >
#>
countCloneSizes(combined_pbmc, "nt", orig.ident = c("P17B", "P17L"))
#> $`1`
#>
#> NA_TGCGCCAGCAGCTTGGGTCAGGGTGTGCGAGAGACCCAGTACTTC
#> 1
#> NA_TGTGCCAGCAGTTACTCGCCGACAGGGGCTCGTAACACCATATATTTT
#> 1
#> TGTGCAGCAAGCCGGGGAGGAGCCAATAGTAAGCTGACATTT_TGTGCCAGCAGCCAAGGGGGGCCTTCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TGTGCTCTGAGAGGGCCAGGAACCTACAAATACATCTTT_TGTGCCTGGAGTGTATGGACGGCCGACACTGAAGCTTTCTTT
#> 1
#> TGTGCTGTCCGGACTAACAGAGATGACAAGATCATCTTT_TGCGCCAGCAGCTTGGGGGGGGCAGGCACAGATACGCAGTATTTT
#> 1
#> TGTGCTGTCTCGAACACCGGTAACCAGTTCTATTTT_TGTGCCAGCAGTGAGCCAGGGATAGATACGCAGTATTTT
#> 1
#> TGTGCTGTGCAGGCCGGATATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TGTGCCAGCAGACTAACCGGTACAAGGGGCGGGGAGCTGTTTTTT
#> 1
#>
#> $`2`
#>
#> TGTGCCCCCAGAGCAGGAGGAAGCTACATACCTACATTT_TGTGCCAGCAGCTTACCCCGGACGGGCGACACTGAAGCTTTCTTT
#> 1
#> TGTGCCGTGAACCCGAATTCAGGAAACACACCTCTTGTCTTT_TGTGCCAGCAGCCAAGGACAGTCCTCCCAACTTGCAGAGACCCAGTACTTC
#> 1
#>
#> $`3`
#>
#> NA_TGTGCCAGCAGAGCGGGACAGGGGAGAGGGGCCAACGTCCTGACTTTC
#> 1
#> NA_TGTGCCAGCAGTTTATCCCTCAGTGACGGCCGGCATGGCTACACCTTC
#> 1
#> TGTGCAGCAGGGGATACCGGCACTGCCAGTAAACTCACCTTT_NA
#> 1
#> TGTGCCGGGGATAGCAGCTATAAATTGATCTTC_TGTGCCAGCTCAGGGACTAGCGGGGAACTACTCGACACCGGGGAGCTGTTTTTT
#> 1
#> TGTGCCGTGAACCCGGATAGCAACTATCAGTTAATCTGG;TGTGCTGTGATCACTGAGAGGGATAACCAGGGAGGAAAGCTTATCTTC_TGTGCCTGGGATGCCGGACAGCGAAACGAGCAGTACTTC
#> 1
#> TGTGCTCTGAGTGACGGGCCTCTGGTGGCAGGCAACATGCTCACCTTT_TGTGCCAGCAGCCTCGGACAGGGGATATACAATGAGCAGTTCTTC
#> 1
#> TGTGCTGAGTTAGAGACGGGCAGGAGAGCACTTACTTTT_TGTGCCAGCAGTATACAGGGAAATAGAAGGGAGCAGTTCTTC
#> 1
#> TGTGCTGTGCAGGCCAATGACAGCTGGGGGAAATTGCAGTTT_TGTGCCAGCACCCTAGTGGAGGGTGGTGACGAGCAGTACTTC
#> 1
#> TGTGCTGTGCGAGGAGAAGGCTTTCAGAAACTTGTATTT_TGTGCCAGCAGTTCGCGGACTAGCGGGGGTTCCTACGAGCAGTACTTC
#> 1
#> TGTGTGGTCTCCGATAATACTGGAGGCTTCAAAACTATCTTT_TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 1
#> TGTGTGGTGAACTCACCTACAGGCTTTCAGAAACTTGTATTT_TGTGCCAGCAGTTCTCGACAGGATAGCACAGATACGCAGTATTTT
#> 1
#> TGTGTGGTGAGCGACTTTGGAAATGAGAAATTAACCTTT_TGTGCCAGCAGTTTAGGGTCGGGGGGGACGGGGAATGAGCAGTTCTTC
#> 1
#>
#> $`4`
#>
#> NA_TGCAGTGCTAGGGACAGGGGGCGTGGGGGTAACAATCAGCCCCAGCATTTT
#> 1
#> NA_TGTGCCAGCAGCCGGGGGGATTGGTACGAGCAGTACTTC
#> 1
#> NA_TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 3
#> NA_TGTGCCGCGGGGCAGGGGGTCATGAACACTGAAGCTTTCTTT
#> 1
#> TGTGCTCTGACCCTACTCCCTATAATTCAGGGAGCCCAGAAGCTGGTATTT_TGTGCCAGTAGACAGGGGTTGGGGACTGAAGCTTTCTTT
#> 1
#> TGTGCTGTGACCTTCCATTATAACACCGACAAGCTCATCTTT_TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#> TGTGCTGTGAGGGGGGAGACTGGTTCTGCAAGGCAACTGACCTTT_TGTGCCAGCAGTTTATTTGGAGAAAAACTGTTTTTT
#> 1
#> TGTGCTGTGAGTGATTCGAACACAGGCTTTCAGAAACTTGTATTT_TGCAGTGCCCCTGGGACAGGGATATTTATGGTTGACTACACCTTC
#> 1
#> TGTGCTGTGGAGGATCAGGTTACTGGAGGCTTCAAAACTATCTTT_TGTGCCGCGGGGCAGGGGGTCATGAACACTGAAGCTTTCTTT
#> 1
#> TGTGTGGTCTCCGATAATACTGGAGGCTTCAAAACTATCTTT_TGTGCCAGCAGCGTAAGGAGGGAAAGGGCGAACACCGGGGAGCTGTTTTTT
#> 10
#>
#> $`5`
#>
#> NA_TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#> TGTGTGGTGAACGTCCCAGGAGGACGAAGCCAAGGAAATCTCATCTTT_TGTGCCAGCAGCGTAGGGAGCGCCTCCTCCTACGAGCAGTACTTC
#> 1
#> TGTGTGGTGAGCGACTTTGGAAATGAGAAATTAACCTTT_TGTGCCAGCAGTTTAGGGTCGGGGGGGACGGGGAATGAGCAGTTCTTC
#> 1
#>
#> $`6`
#>
#> TGCCTCGTGGGTGACAACCTGAACACAGGCTTTCAGAAACTTGTATTT_TGTGCCAGCAGCCCCCGACCGGGAAACACGGGCAATCAGCCCCAGCATTTT
#> 1
#> TGTGCCGTGAGGATAAGCCAAGGAAACACACCTCTTGTCTTT_TGCAGTGCTGGCCCTGGGATTCAGTACTTC
#> 1
#> TGTGCCGTGGAGGGAGCCCAGAAGCTGGTATTT_TGTGCCAGCAGCGCACTCCCCGGGCCGCCTTCCCAGCCCCAGCATTTT
#> 1
#> TGTGCTGTGAGTGATACTGGGGGTTACCAGAAAGTTACCTTT_TGCAGTGCTAGAGATGGGACAGCTTTTAACTATGGCTACACCTTC
#> 1
#>
#> $`7`
#>
#> TGTGCAATGAGAGAGCCCTTTTCTGGTGGCTACAATAAGCTGATTTTT;TGTGCTGCTAACTCTGGGGCTGGGAGTTACCAACTCACTTTC_TGTGCCAGCAGTTTAACGGCCGGGTGGATGGATGAGCAGTTCTTC
#> 1
#> TGTGCCGTGCAGGGAGGAAGCTACATACCTACATTT_TGTGCCAGCGGGGTAGACACCCACACCGGGGAGCTGTTTTTT
#> 1
#> TGTGCTCTCGGTATAGGCTTTGGGAATGTGCTGCATTGC_TGCAGTGCGAACCCCAAGTCGACTTCCTACGAGCAGTACTTC;TGTGCCATCGGCTCTAGCGGGAGCACAGATACGCAGTATTTT
#> 1
#> TGTGCTGTGCAGGCGAGTGGGAACAACAGACTCGCTTTT_TGTGCCAGCAGCCCTAGCTCCCGTAGCTCCTACGAGCAGTACTTC
#> 1
#>
#> $`8`
#>
#> NA_TGCAGTGCTAGAGTCGAAGCGCAAGAGACCCAGTACTTC
#> 1
#> NA_TGCAGTGTCCAGAGACTAGCGGGAAAAGCTGAGCAGTTCTTC
#> 1
#> TGTGCAATGAGCCCTAGCTTTCAGAAACTTGTATTT;TGTGCAGCAAGCGCGCGTAATAACAATGCCAGACTCATGTTT_TGTGCCAGCAGTCTAAGGGGGGGGAACACTGAAGCTTTCTTT;TGTGCCAGCAGTTCGACTAGCGGGAGTACCGGGGAGCTGTTTTTT
#> 1
#> TGTGCAGAGAACCCCTATGGGAACAACAGACTCGCTTTT_TGTGCCAGCAGCTTACAGGGGGCAAGTAATGAAAAACTGTTTTTT
#> 1
#> TGTGCAGAGAGTATGGGGTACAGCAGTGCTTCCAAGATAATCTTT_TGCAGTGCCCTGAGGGAGGGGACCACAGATACGCAGTATTTT
#> 1
#> TGTGCTGTGAGTGAAGCCGACGGAAACACACCTCTTGTCTTT_TGTGCCAGCAGCGGGGGACTACACAATGAGCAGTTCTTC
#> 1
#> TGTGCTGTGAGTGATCCTAGGAACCAGGGAGGAAAGCTTATCTTC_TGTGCCAGCAGTTTAGCGGAGTTTGCTTACACAGATACGCAGTATTTT
#> 1
#> TGTGCTGTGGAGGACACCAATGCAGGCAAATCAACCTTT_TGCGCCAGCAGCCAAGGCCGCGATCAGCCCCAGCATTTT
#> 1
#> TGTGCTGTGGAGGCCCAAACTGGGGCAAACAACCTCTTCTTT_TGCGCCAGCAGCCCCAGAGCCGGGACACCGAACACTGAAGCTTTCTTT
#> 1
#> TGTGCTTATAGGAGCGCGCAGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT_TGTGCCATCAGTGAACAGGGGAAAGGGGAGCTGTTTTTT
#> 1
#>
#> $`9`
#>
#> NA_TGTGCCAGCAGCTTAATGGGTGGACTAGCGGGGGCCTACACAGATACGCAGTATTTT
#> 1
#> TGTGCCCTTAACTTTGGAAATGAGAAATTAACCTTT_TGCGCCAGCAGCCACACGGACAGGCCGCTCACTGAAGCTTTCTTT
#> 1
#> TGTGCTGTGACCTTCCATTATAACACCGACAAGCTCATCTTT_TGCGCCAGCAGCCAAGACCGGACGGGACTAGACTACGAGCAGTACTTC
#> 1
#>
#> $`10`
#>
#> NA_TGTGCCAGCAGCCCTTTGGGGGAGGTAGAAGATACGCAGTATTTT
#> 1
#> NA_TGTGCCAGCAGCTTAGAGGGTCTAGGGGGGAGGGAGCAGTTCTTC
#> 1
#> NA_TGTGCCAGCAGTTCCCAGCGACAGGACTTGAACACTGAAGCTTTCTTT
#> 1
#> TGTGCCGTAGGTGGAACTGGTGGCTACAATAAGCTGATTTTT_TGCGCCAGCAGCCAAGACAGGGCCCGGCAAGGAAACATTCAGTACTTC
#> 1
#> TGTGCTACGGTCCCTCCCCCTCAGGGCGGATCTGAAAAGCTGGTCTTT_TGTGCCAGCAGCTTAGGACAGGGACGGGCGAGTAATGAAAAACTGTTTTTT
#> 1
#> TGTGCTGTCAGCCAAGGAAATCTCATCTTT_TGTGCCAGTAGCCTCGGGACTAGCGCATACAATGAGCAGTTCTTC
#> 1
#> TGTGCTGTGACGGATGGCCAGAAGCTGCTCTTT_TGTGCCAGCAGACTGGACAGGGGGGGGAACTATGGCTACACCTTC
#> 1
#> TGTGCTGTGAGTGGGAGATCAGGAGGAAGCTACATACCTACATTT_TGTGCCAGCAGCTTAAACTCTCGACAGCTTGGGGGTCAGCCCCAGCATTTT;TGTGCCAGCAGCTTAGAGGGACACTCCAGAGGCAATCAGCCCCAGCATTTT
#> 1
#> TGTGTGGTGGGCGGAGGAAGCCAAGGAAATCTCATCTTT_TGTGCCAGCAGCTTACGTCCGGCGGGCTACGAGCAGTACTTC
#> 1
#> TGTGTTGTGACCTCCACAGGCTTTCAGAAACTTGTATTT_TGCGCCAGCAGCCAAGAGGCAGGGGCAGATACGCAGTATTTT
#> 1
#>
#> $`11`
#> < table of extent 0 >
#>
#> $`12`
#>
#> TGTGCTGTGAGTGAAAATAATGCAGGCAACATGCTCACCTTT_TGTGCCAGCACGGACAGGGGCTTTAACGGCTACACCTTC;TGTGCCAGCTCACCACCGTCGGCAGGAGGTGATACGCAGTATTTT
#> 1
#>
#> $`13`
#>
#> TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT_TGTGCCAGCTCATCAGGGGAAAAAGGCTACACCTTC
#> 1
#> TGTGCCCCGCACACAGGCTTTCAGAAACTTGTATTT_TGTGCCAGCAGCTTAGGATCGGGGGACAGATACGAGCAGTACTTC
#> 1
#>
#> $`14`
#> < table of extent 0 >
#>
#> $`15`
#>
#> TGTGCTGTGTTCTGGGTGGGGAATAGTGGAGGTAGCAACTATAAACTGACATTT_NA
#> 1
#>
#> $`16`
#> < table of extent 0 >
#>
#> $`17`
#> < table of extent 0 >
#>