A generated 'SeuratObject' of a small single-sample sc-RNAseq experiment.
Has a corresponding T-cell receptor library generated from
single cell immune profiling, named "mini_clonotype_data"
Usage
data("mini_seurat_obj")Format
A Seurat object with the following slots filled
- assays
-
counts - Raw expression data
data - Normalized expression data
scale.data - Scaled expression data
var.features - names of the current features selected as variable
meta.features - Assay level metadata such as mean and variance
- meta.data
Cell level metadata
- active.assay
Current default assay
- active.ident
Current default idents
- graphs
Neighbor graphs computed, currently stores the SNN
- reductions
Dimensional reductions: PCA, UMAP, and tSNE
- version
Seurat version used to create the object
- commands
Command history